Pairwise Alignments

Query, 442 a.a., anaerobic C4-dicarboxylate transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 436 a.a., anaerobic C4-dicarboxylate transporter dcuB (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  409 bits (1050), Expect = e-118
 Identities = 215/441 (48%), Positives = 294/441 (66%), Gaps = 9/441 (2%)

Query: 2   LYVEFLFLLLMLYIGSRYGGIGLGVVSGIGLVIEVFVFKMPPTSPPITVMLIILAVVTCA 61
           + ++  F+L  + IG+R GGIGLGV+ G+GL I  FVF + PT+PPI VML+I AV++ A
Sbjct: 1   MILQLAFVLTAIIIGARLGGIGLGVMGGVGLGILTFVFGLQPTAPPIDVMLMIAAVISAA 60

Query: 62  SILEAAGGLKYMLQVAERMLRKNPKRVTLIAPFVTYTMTFMLGTGHAVYSIMPIIGDVAL 121
           S ++AAGGL YM+++AE +LRKNP  VTL++P VTY  TF+ GTGH  YS++P+I +VA 
Sbjct: 61  SCMQAAGGLDYMVKLAEHLLRKNPSHVTLLSPLVTYLFTFIAGTGHVAYSVLPVIAEVAT 120

Query: 122 KNGIRPERPMAAASVASQIAITASPISAAVVYYLAELANINHNITLLSILMVTIPATLFG 181
           +  IRPERP+  A +ASQ AITASPISAA V  L  LA  +  ITL  IL +TIPAT+ G
Sbjct: 121 ETKIRPERPLGIAVIASQQAITASPISAATVALLGLLAGFD--ITLFDILKITIPATIIG 178

Query: 182 TLLMSLYSLRRGKELDNDPEYQARLQDPVWREKILNTTATSLDETLPASARNSVLLFISS 241
            L+ +L+S++ GKEL  DPEYQ RL++ ++ +K +       D     SA  SVL+FI +
Sbjct: 179 VLVGALFSMKVGKELIEDPEYQKRLKEGLFNDKKIEIK----DVKNKRSAMLSVLIFILA 234

Query: 242 ILVIVVIAMWPEIRT---IQEGTKPIGMDMVIQMIMLCFGGIILLATKTDPRSVPNGVVF 298
              IV+   +  +R    I      +GM  +I+++ML    IIL+ TKTD      G VF
Sbjct: 235 TAFIVLFGSFEGMRPSFLIDGEIVTLGMSSIIEIVMLSAAAIILIVTKTDGIKATQGSVF 294

Query: 299 KSGMVAAIAIFGIAWMSDTYFQYAMPQFKSGIVEMVTNYPWTFALALFIVSVVVNSQAAV 358
            +GM A IAIFGIAWM DT+ Q  M Q    I  +V   PW F +ALF++S+++ SQAA 
Sbjct: 295 PAGMQAVIAIFGIAWMGDTFLQGNMAQLTLSIEGIVRQMPWLFGIALFVMSILLYSQAAT 354

Query: 359 ARMMLPVGLGLGLEPALLIGLMPALYGYFFIPNYPSDIATVNFDNTGTTKIGKWYFNHSF 418
            R ++P+G+ LG+ P +LI L PA+ GYFFIPNYP+ +A +NFD TGTTKIGK+  NHSF
Sbjct: 355 VRALMPLGIALGISPYMLIALFPAVNGYFFIPNYPTVVAAINFDRTGTTKIGKYVLNHSF 414

Query: 419 MAVGLISVISACCVGFVLSKI 439
           M  GL+S + A  +G +  +I
Sbjct: 415 MMPGLVSTVVAIVLGLLFIQI 435