Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., ATP-dependent RNA helicase PA3950 from Pseudomonas fluorescens FW300-N2E2

 Score =  458 bits (1179), Expect = e-133
 Identities = 237/408 (58%), Positives = 304/408 (74%), Gaps = 2/408 (0%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F +LGL  P+L+A+E  GY TP+P+Q QA+PAVLAG+D+MAAAQTGTGKTAGF +P+L
Sbjct: 1   MTFATLGLIEPLLRALETLGYQTPTPVQAQAMPAVLAGRDLMAAAQTGTGKTAGFAVPLL 60

Query: 61  ELLA-KGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQR 119
           +LL  +GPKV AN VRALIL PTRELA Q+ ++V  Y ++LPL +  V+GGV INPQM +
Sbjct: 61  QLLTTEGPKVAANSVRALILVPTRELAEQVHESVRQYAQNLPLSTYAVYGGVSINPQMMK 120

Query: 120 MCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKR 179
           + KG D+LVATPGRL+DL+ QNA+KF+QL+ LVLDEADRMLD+GF  ++  I K LP+KR
Sbjct: 121 LRKGVDLLVATPGRLLDLFRQNALKFNQLQTLVLDEADRMLDLGFSEELANIYKALPKKR 180

Query: 180 QNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVK 239
           Q LLFSATFS  IR LA  ++N+P+ I VSP N  A TV+Q +   D K+KP++ V L++
Sbjct: 181 QTLLFSATFSDAIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVTVDKKRKPELFVHLMR 240

Query: 240 EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVA 299
           +  W+QVLVF +T++G + L   L   G+ A  IHG+K Q  R RAL  FKAGEV+ILVA
Sbjct: 241 KHKWKQVLVFAKTRNGVDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKAGEVQILVA 300

Query: 300 TDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIE 359
           TD+AARG+DI  LP VVNF+LP +AEDY+HRIGRTGRAG  G+AISLV A E   L AIE
Sbjct: 301 TDVAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGATGQAISLVCADEVNLLSAIE 360

Query: 360 RLTQALLPRVNLAGFEPTNQLPESKLDTRPL-KPKKPKKPKKVEGAGE 406
            LT+  LPR     FEP +++P++    + + KPKKPKKPK   G G+
Sbjct: 361 MLTRQTLPRQMEQDFEPEHRVPDTDASGQVIKKPKKPKKPKTSGGGGK 408