Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 619 a.a., DEAD/DEAH box helicase from Pseudomonas fluorescens FW300-N2E3

 Score =  447 bits (1149), Expect = e-130
 Identities = 242/458 (52%), Positives = 305/458 (66%), Gaps = 11/458 (2%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F SLGLS  +++AIE  GY  P+P+Q +AIPAVL G+D+M AAQTGTGKT GF LPIL
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  ELLA------KGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKIN 114
           E L       K  +    Q R L+LTPTRELAAQ+ ++  +Y R L   SA +FGGV +N
Sbjct: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKVYARDLKFVSACIFGGVGMN 120

Query: 115 PQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKL 174
           PQ+Q M +G D+LVA PGRL+DL  Q +V    +EILVLDEADRMLDMGF+ D+ K+L  
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 175 LPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDML 234
           LP KRQNLLFSATFS +I +LA  L++NP  I V+P N+T   +EQ ++      K  +L
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRSLL 240

Query: 235 VKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEV 294
             L+  G W+QVLVF RTKHGANRLA YL++ GL+A AIHGNKSQ ART+ALADFKAGEV
Sbjct: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEV 300

Query: 295 RILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPE 354
           RILVATDIAARG+DI QLP VVNFELP + EDYVHRIGRTGRAG  G+AISLV+  E   
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 355 LFAIERLTQALLPRVNLAGFEPT---NQLPESKLDTRPLKPKKPKKPK--KVEGAGENKG 409
           L +IER+T+  +   +L GF+ +    + PE +       P+ P+ P+     G+G   G
Sbjct: 361 LKSIERMTKQKIADGDLMGFDSSAVEAEKPEVRERPDVRNPRNPRGPRGDGPNGSGGGGG 420

Query: 410 SVAENKPKAGHRGQPTGQARTAKKGGTHSEPKKPTKRP 447
              + K K G      G+     +      P +  +RP
Sbjct: 421 RKDKGKDKGGKEKPAAGRGERPAQKPREGTPAREQQRP 458