Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 605 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  455 bits (1170), Expect = e-132
 Identities = 243/451 (53%), Positives = 308/451 (68%), Gaps = 20/451 (4%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F SLGLS  +  A+E  GY  P+P+Q +AIPAVL G+D+M AAQTGTGKT GF LP+L
Sbjct: 1   MSFASLGLSEALAGAVEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL 60

Query: 61  ELLAKGP------KVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKIN 114
           ELL  G       +    Q R L+LTPTRELAAQ+ ++  +Y R LPLKS  +FGGV +N
Sbjct: 61  ELLFPGGHPDREHRYGPKQPRVLVLTPTRELAAQVHESFKVYARDLPLKSTCIFGGVGMN 120

Query: 115 PQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKL 174
           PQ+Q + KG D+LVA PGRL+DL NQ A+    +EILVLDEADRMLDMGFI D+ K+L  
Sbjct: 121 PQIQAVAKGLDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK 180

Query: 175 LPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDML 234
           LP KRQNLLFSATFS +I +LA  L++NP  I V+P N+T   +EQ ++      K  +L
Sbjct: 181 LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRMFRVAASHKRALL 240

Query: 235 VKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEV 294
             L+ +G W+QVLVF RTKHGANRLA YL + GL AAAIHGNKSQ ART+ALADFKA +V
Sbjct: 241 AHLITQGAWEQVLVFTRTKHGANRLAEYLEKHGLPAAAIHGNKSQNARTKALADFKANQV 300

Query: 295 RILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPE 354
           RILVATDIAARG+DI QLP VVNFELP + EDYVHRIGRTGRAG  G+AISLV+  E   
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 355 LFAIERLTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAEN 414
           L  IER+T+  +P  +L GF+       S ++    + ++P++P+   G G+ +G    N
Sbjct: 361 LKGIERMTKQRIPEGDLMGFD------ASAIEAEKPEVREPRQPRPQRGEGKARGE--RN 412

Query: 415 KPKAGHRGQPTGQARTAKKGGTHSEPKKPTK 445
           KP         G  +  +   + S+ +KP +
Sbjct: 413 KP------AEKGAEQKERNRRSQSKSRKPAR 437