Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 556 a.a., Superfamily II DNA and RNA helicases from Pseudomonas stutzeri RCH2

 Score =  280 bits (717), Expect = 6e-80
 Identities = 153/371 (41%), Positives = 222/371 (59%), Gaps = 5/371 (1%)

Query: 2   GFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE 61
           GF +LG+ + +L AI   GY  PSPIQ QAIP +L G D++  AQTGTGKTA F LPIL 
Sbjct: 7   GFAALGIHSAVLAAISAVGYEEPSPIQSQAIPVILGGHDMIGQAQTGTGKTAAFALPILS 66

Query: 62  LLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLP-LKSAVVFGGVKINPQMQRM 120
            +    K    +V+ALIL PTRELA Q+      Y + +P L    V+GG  + PQ++ +
Sbjct: 67  KIDPARK----EVQALILAPTRELALQVATAFETYSKQMPGLTVVAVYGGAPMGPQLKAI 122

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
            +GA ++VATPGRL+D  ++N+     +  LVLDEAD ML +GF+ D+  I + +PE RQ
Sbjct: 123 RQGAQVIVATPGRLVDHLSRNSGLLSTIRFLVLDEADEMLKLGFMDDLEVIFEAMPESRQ 182

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
            +LFSAT    IR +A+  +  P  I ++    T   +EQ        +K   +++L++ 
Sbjct: 183 TVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQTVARIEQAHLMVHADQKIQAVLRLLEV 242

Query: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
            ++  ++ F+RTK     LA  L  +G  AAA++G+ +Q  R R +   K G + I+VAT
Sbjct: 243 EDFDALIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVAT 302

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
           D+AARG+D+ ++  V N ++P   E YVHRIGRTGRAG  G+A+ LV+  E   L  IER
Sbjct: 303 DVAARGLDVARITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIER 362

Query: 361 LTQALLPRVNL 371
           +T   +    L
Sbjct: 363 VTNQKVAEARL 373