Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score =  437 bits (1125), Expect = e-127
 Identities = 229/411 (55%), Positives = 294/411 (71%), Gaps = 3/411 (0%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F SLGL  P+L+A+E  GY TP+P+Q QAIP VLAG+D+MAAAQTGTGKTAGF LP+L
Sbjct: 1   MTFASLGLIEPLLRALEALGYQTPTPVQTQAIPPVLAGRDLMAAAQTGTGKTAGFALPLL 60

Query: 61  ELLA-KGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQR 119
           + L  +GPKV  N +RAL+L PTRELA Q+ +++  Y  HLPL +   +GGV INPQM +
Sbjct: 61  QRLTMEGPKVAPNSIRALVLAPTRELADQVHESIRQYAEHLPLTTYAAYGGVSINPQMMK 120

Query: 120 MCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKR 179
           + +G D+LVATPGRL+DL+ QNAVKF QL+ L+LDEADRMLD+GF  ++  I  +LP++R
Sbjct: 121 LRRGVDVLVATPGRLLDLHRQNAVKFSQLQTLILDEADRMLDLGFAEELRGIYAVLPKQR 180

Query: 180 QNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVK 239
           Q LLFSATFS EIR LA  ++N+P+ I VSP N  A +V+Q +   D K+K D+ + L+K
Sbjct: 181 QTLLFSATFSDEIRLLAAQMLNDPLTIEVSPRNVAASSVKQWVVTVDKKRKADLFIHLMK 240

Query: 240 EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVA 299
           +  W QVLVF +T+ G ++L   L   G+ A  IHG+K Q  R RAL  FK+ EV+ILVA
Sbjct: 241 KHRWGQVLVFAKTRVGVDQLVDRLQALGMNADGIHGDKPQATRQRALDRFKSNEVKILVA 300

Query: 300 TDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIE 359
           TD+AARG+DI  LP VVN +LP +AEDY+HRIGRTGRAG  G+AISLV A E   L AIE
Sbjct: 301 TDVAARGLDIDDLPTVVNLDLPIVAEDYIHRIGRTGRAGLTGEAISLVCADEVELLSAIE 360

Query: 360 RLTQALLPRVNLAGFEPTNQLPESKLDTRPL-KPKKPKKPKKVEGAGENKG 409
            LT+  L R     FEP +++P +    + L KPKKPKK  KV G+  N G
Sbjct: 361 VLTRQTLERKEEQDFEPEHRVPSTDASGQILKKPKKPKK-SKVSGSKRNLG 410