Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score =  443 bits (1140), Expect = e-129
 Identities = 241/458 (52%), Positives = 309/458 (67%), Gaps = 10/458 (2%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F SLGLS  +++AIE  GY  P+P+Q +AIPAVL G+D+M AAQTGTGKT GF LPIL
Sbjct: 1   MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60

Query: 61  ELLA------KGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKIN 114
           E L       K  +    Q R L+LTPTRELAAQ+ ++  LY R L   SA +FGGV +N
Sbjct: 61  ERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMN 120

Query: 115 PQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKL 174
           PQ+Q M +G D+LVA PGRL+DL  Q +V    +EILVLDEADRMLDMGF+ D+ K+L  
Sbjct: 121 PQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180

Query: 175 LPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDML 234
           LP KRQNLLFSATFS +I  LA  L++NP  I V+P N+T   +EQ ++      K  +L
Sbjct: 181 LPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLL 240

Query: 235 VKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEV 294
             L+  G W+QVLVF RTKHGANRLA YL++ GL A AIHGNKSQ ART+ALADFKAG+V
Sbjct: 241 AHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDV 300

Query: 295 RILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPE 354
           RI+VATDIAARG+DI QLP VVNFELP + EDYVHRIGRTGRAG  G+AISLV+  E   
Sbjct: 301 RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360

Query: 355 LFAIERLTQALLPRVNLAGFEPTN-QLPESKLDTRP-LKPKKPKKPKKVEGAGENKGSVA 412
           L +IER+T+  +   +L GF+ T  +  + ++  RP ++  +  +P + +G   N G   
Sbjct: 361 LKSIERMTKQKIADGDLMGFDITAVEAEKPEVRERPDVRNSRGARPARGDGDKNNGGRRD 420

Query: 413 ENKPKAGHRGQPTGQARTAKKGGTHSEPKKPTKRPVRN 450
           + K K   + +P   + T ++       KKP +   R+
Sbjct: 421 KGKDKG--KEKPAAASATGERPARQPREKKPREGTPRS 456