Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 499 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  305 bits (781), Expect = 2e-87
 Identities = 176/409 (43%), Positives = 248/409 (60%), Gaps = 10/409 (2%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F  LGLS  +L A+ + GY  P+PIQ+ AIP  L  +D++  AQTGTGKTA F LP+L L
Sbjct: 4   FADLGLSQKVLSAVTDAGYTIPTPIQVGAIPPALQRRDILGIAQTGTGKTASFVLPMLTL 63

Query: 63  LAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122
           L KG + RA   R LIL PTRELAAQ+ +N   YG++  L  A++ GGV  + Q +++ +
Sbjct: 64  LEKG-RARARMPRTLILEPTRELAAQVAENFDKYGKNHKLNIALLIGGVSFDEQDRKLER 122

Query: 123 GADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNL 182
           GAD+L+ TPGRL+D   +  +    +EILV+DEADRMLDMGFI DI +I KL+P  RQ L
Sbjct: 123 GADVLICTPGRLLDHCERGKLLMTGVEILVIDEADRMLDMGFIPDIERIAKLIPFTRQTL 182

Query: 183 LFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPA---DVKKKPDMLVKLVK 239
            FSAT   EI++LA   + NP  + V+  +STA TV Q    A   D +K+  +   +  
Sbjct: 183 FFSATMPPEIQKLADRFLQNPERLEVARRSSTAITVTQRFVAAHGKDYEKRAVLRELIRS 242

Query: 240 EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVA 299
           + + +  ++F   K     L   L+  G +  A+HG+  Q +R   LA+FK G +++LVA
Sbjct: 243 QEDLKNAIIFCNRKKDVAELFRSLDRHGFSVGALHGDMDQRSRMAMLANFKDGNIKLLVA 302

Query: 300 TDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIE 359
           +D+AARG+DIP +  V NF++P  AEDYVHRIGRTGRAG  G A ++V+  E     AIE
Sbjct: 303 SDVAARGLDIPDVSHVFNFDVPIHAEDYVHRIGRTGRAGRSGAAFTIVTKRETKFSDAIE 362

Query: 360 RLTQALLPRVNLAGFEPTNQLPE--SKLDTRPLKPKKPKKPKKVEGAGE 406
           +L    +   N       ++LPE     D+R  +    +K +K E  G+
Sbjct: 363 KLIGQKVEWFN----GDLSELPEPMESHDSRRDRGSDGRKDRKRERPGK 407