Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., ATP-dependent RNA helicase from Sinorhizobium meliloti 1021

 Score =  332 bits (852), Expect = 1e-95
 Identities = 194/428 (45%), Positives = 260/428 (60%), Gaps = 11/428 (2%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILE- 61
           F  LGLS  I+  +   G+  P+PIQ QAIP VL   D++  AQTGTGKTA F LP++E 
Sbjct: 4   FKELGLSEHIVATLSANGFEKPTPIQAQAIPLVLKDHDLIGLAQTGTGKTAAFGLPMIEK 63

Query: 62  LLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMC 121
           L+A G +     +RAL+L PTREL  QI  N+ L+ +  PLK  +V GGV IN Q +++ 
Sbjct: 64  LVADGRRPDPRNIRALVLAPTRELVNQIAANLKLFVKKSPLKIGLVVGGVSINKQTEQLA 123

Query: 122 KGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQN 181
           +G DILVATPGRL+DL ++ AV   Q   LVLDEAD+MLD+GFI D+ KI KL+P+ RQ 
Sbjct: 124 RGVDILVATPGRLLDLVSRKAVTLTQARYLVLDEADQMLDLGFIHDLRKISKLVPKNRQT 183

Query: 182 LLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEG 241
           LLFSAT    I ELA   + +PV++ VSP    A  VEQ ++    K     ++K     
Sbjct: 184 LLFSATMPKLIAELAGEYLTDPVKVEVSPPGKAADKVEQYVHFVPGKDLKTTILKQTLTA 243

Query: 242 NWQQV-LVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
           N   + L+F RTKHGA +L  +L+  G  AA+IHGNKSQG R RAL  F+ GE+R+LVAT
Sbjct: 244 NPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVLVAT 303

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
           D+AARGIDIP +  V N++LP++ + YVHRIGRT R G  G AI+  +  E   L  IE+
Sbjct: 304 DVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEIRLLRDIEK 363

Query: 361 LTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAENKPKAGH 420
           L    +     +G  P +Q        RP K +  +   +  G G+ +G+ A  +     
Sbjct: 364 LMGIQI--AVASGEAPADQ-------ARPSKGRGGRGNGQPRGNGQPRGNGAGQRQGGPR 414

Query: 421 RGQPTGQA 428
           R +P  QA
Sbjct: 415 RDRPQRQA 422