Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., DEAD-box ATP dependent DNA helicase (RefSeq) from Shewanella amazonensis SB2B

 Score =  507 bits (1305), Expect = e-148
 Identities = 276/462 (59%), Positives = 332/462 (71%), Gaps = 23/462 (4%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F SLGLSAPILKA++ KGY TPSPIQ QAIP VL G+D++AAAQTGTGKTAGFTLP+L
Sbjct: 1   MSFASLGLSAPILKALDHKGYKTPSPIQAQAIPVVLEGRDLLAAAQTGTGKTAGFTLPLL 60

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120
           ELL++  K    QVRALILTPTRELAAQI DN+  Y ++LPLKS VVFGGV I PQ+  +
Sbjct: 61  ELLSQTQKAGPKQVRALILTPTRELAAQIADNITAYSKYLPLKSTVVFGGVGIGPQITTL 120

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
            +G DILVATPGRL+DL+ QNAV F  LEILVLDEADRMLDMGFI DI +ILKLLP KRQ
Sbjct: 121 RRGIDILVATPGRLLDLHQQNAVSFHGLEILVLDEADRMLDMGFIHDIKRILKLLPAKRQ 180

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
           NLLFSATFS EIR LA GL++N  E+SV+P NS A +V+Q I P D  +KP +L +L + 
Sbjct: 181 NLLFSATFSPEIRTLAHGLLHNAAEVSVTPRNSAAESVKQWIVPVDKNQKPALLAELTRF 240

Query: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
             WQQVLVF RTKHGANRL   ++ +G+ AAAIHGNKSQ ART+ALADFK G +R+L+AT
Sbjct: 241 YRWQQVLVFCRTKHGANRLVRQMDAEGIKAAAIHGNKSQNARTQALADFKRGAIRMLIAT 300

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
           DIAARGIDI +LP VVNFELP + EDYVHRIGRTGRAG  G+A SLV   EA +L  IER
Sbjct: 301 DIAARGIDISELPNVVNFELPHVPEDYVHRIGRTGRAGASGEAASLVCNEEAKQLRDIER 360

Query: 361 LTQALLPRVNLAGFEPTNQLP--ESKLDTRPLKPKKPKKP------KKVEGAGENKGSVA 412
           L +  LPR    GFEP + LP  E++  ++P   K+  KP      +K +G   N    A
Sbjct: 361 LIKQSLPRKEFVGFEPVHGLPPSENQGKSKPGGSKQGAKPGNKSQGRKPQGQSRN----A 416

Query: 413 ENKPKAGHRGQP-----------TGQARTAKKGGTHSEPKKP 443
           + K + G R Q            + Q R  ++G   +  ++P
Sbjct: 417 QPKQRQGSRAQEERSQQDKNPSRSEQPRRERRGNDQARSERP 458



 Score = 28.5 bits (62), Expect = 6e-04
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 407 NKGSVAENKPKAGHRGQPTGQ--ARTAKKGGTHSE 439
           N    A NKP++G+R Q  GQ   R++ KGG  ++
Sbjct: 498 NTDRAASNKPRSGNRPQGQGQQRPRSSAKGGERNQ 532