Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., DEAD-box ATP dependent DNA helicase (RefSeq) from Shewanella amazonensis SB2B

 Score =  317 bits (812), Expect = 5e-91
 Identities = 183/451 (40%), Positives = 263/451 (58%), Gaps = 13/451 (2%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F SLGL+AP+L+ + + GY TP+ IQ Q+IP +L+G+D++A AQTG+GKTA F LPIL
Sbjct: 1   MSFDSLGLAAPLLQTLIQCGYRTPTEIQAQSIPVLLSGRDLIAVAQTGSGKTAAFALPIL 60

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120
           + L+   K     ++AL+L PTRELA Q+ D    Y   L L +  V+GGV I PQ Q +
Sbjct: 61  KQLSD--KGLRGGIQALVLVPTRELAVQVADAFTRYSAGLGLTTLAVYGGVNIRPQRQAL 118

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
             G DILVATPGRL+DL  Q  +    +  LVLDEADRMLDMGF  DI KI + L    Q
Sbjct: 119 AAGVDILVATPGRLLDLTGQFGLSLASVGTLVLDEADRMLDMGFAPDIEKIRRQLGP-HQ 177

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
           + +FSA+F+   RELA+  ++N V ++        + +   ++  D  +  + + +LV +
Sbjct: 178 SAMFSASFAQRERELAERWLSNAVSLAAKDTGRIPQQLALEVFMLDKPRWAEFVAELVGK 237

Query: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
            NW+Q LVF+ ++  +N L   L   GL AAA HG K+QGAR R L +FK+G++R+LVAT
Sbjct: 238 RNWRQALVFVSSREESNTLVAELALDGLQAAAFHGEKTQGARRRGLDEFKSGKLRLLVAT 297

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
           D+AARG+DI  LP V++  LP   ED +HR+GR+ RAG  G A+ ++S     +L  ++ 
Sbjct: 298 DVAARGLDIEDLPVVISLGLPHGEEDLIHRLGRSARAGREGLAVIVLSPEMRADLPLLKA 357

Query: 361 LTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAENKPKAGH 420
           L  AL   +   G+ P + LP+   D     P      +    AG+  G+          
Sbjct: 358 LCPALPEVITPEGYSPKDPLPQRYRDGALSTPGSKPANRSGRNAGQRPGT---------R 408

Query: 421 RGQPTGQARTAKKGGTHSEPKKPTKRPVRNG 451
            G  TG     + G ++  P++  K P R G
Sbjct: 409 TGSRTGSRTGGRTGSSNGSPRQSGK-PARQG 438