Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., DEAD-box ATP dependent DNA helicase (RefSeq) from Shewanella amazonensis SB2B

 Score =  306 bits (785), Expect = 6e-88
 Identities = 168/402 (41%), Positives = 238/402 (59%), Gaps = 2/402 (0%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F +  L +P+   + + G+  P+ +Q  AIP +LAG D+M  A TGTGKTA F LPIL
Sbjct: 1   MSFAAFTLPSPLANNLAKLGFVEPTEVQAGAIPMMLAGDDLMVKAATGTGKTAAFLLPIL 60

Query: 61  ELLAKGPKVRAN--QVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ 118
             L        N    RAL+L PTREL  Q+ D      +   ++ A V+GGV +  Q+ 
Sbjct: 61  ARLLADEVASRNLPAPRALVLVPTRELCQQVYDAAKALAKGSAVRIAQVYGGVPLESQLN 120

Query: 119 RMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEK 178
            +  G D++VATPGRL+D   +  ++ D +  LV DEADRMLDMGF  +I  ++K L + 
Sbjct: 121 AIKGGVDLMVATPGRLLDHLKKRTLRIDTVSQLVFDEADRMLDMGFEDEIRALVKKLAKT 180

Query: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLV 238
           RQ  LFSAT    + +LAK L+++P  + ++ A      +E+ +Y  D ++K + +  L+
Sbjct: 181 RQTALFSATLGDNVWQLAKSLMDSPKLLEIAAAKDAKPLIEEQVYQLDSERKFEFICHLL 240

Query: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
            + +W QVL+F RTK GA++L   L E G +A A+H + SQ  R + LADFKA + R+LV
Sbjct: 241 GKNSWSQVLIFSRTKEGADKLTAKLVEAGHSAVAMHADLSQRQREQNLADFKAADARVLV 300

Query: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
           ATD+AARG+DI  LP ++N ELP   EDYVHRIGRTGRAG  G AISL+   + P L A+
Sbjct: 301 ATDVAARGLDIQALPCIINVELPFKKEDYVHRIGRTGRAGSAGLAISLLDVADEPLLVAL 360

Query: 359 ERLTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKK 400
           E      LP+    GFEP   +   +  +     +K K  K+
Sbjct: 361 EHYLDRRLPQQWYPGFEPDLSIRHERPHSLSKAAQKQKARKR 402