Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., ATP-dependent RNA helicase RhlE (RefSeq) from Shewanella amazonensis SB2B

 Score =  364 bits (935), Expect = e-105
 Identities = 199/436 (45%), Positives = 277/436 (63%), Gaps = 11/436 (2%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F  LGL+  I  A+E   Y  P+ IQ +AIP  L+G++++AAAQTGTGKTA F LP++
Sbjct: 1   MSFARLGLAPAITSALESLNYQQPTEIQQKAIPVALSGRNLLAAAQTGTGKTAAFGLPLI 60

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120
           E L++G   R  +VRA+IL PTREL  Q+ DN+  Y  +LPL    ++GGV +  Q Q +
Sbjct: 61  ERLSQGKTERKKRVRAVILAPTRELVVQVADNLSAYAANLPLTVLAMYGGVDMQAQKQAL 120

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
             G DILVATPGRL D+Y+Q AV F+++++LVLDEADRMLDMGFI  I+ ++  +P  RQ
Sbjct: 121 IAGVDILVATPGRLKDMYHQRAVYFEEIQVLVLDEADRMLDMGFIEVINDLISRMPTNRQ 180

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
           NLLFSAT S  IRELAK  V +PVEI++  A  + + + Q +   D   K  +L  L++ 
Sbjct: 181 NLLFSATLSPRIRELAKTAVPDPVEIAI--AKPSKKEISQWLVTVDKDTKSALLSHLIQT 238

Query: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
             WQQ L+F+ TKHGA +L + L ++G+ A A H  +SQ  R + L++FK G ++ LVAT
Sbjct: 239 EQWQQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAVREQVLSEFKDGSLQYLVAT 298

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
            +AARGID+ +L +VVN++LP   ++Y+HRIGRTGRAG  G+A+SL+S  +   L  IE 
Sbjct: 299 GVAARGIDVDKLERVVNYDLPFPPDEYIHRIGRTGRAGMTGEAVSLLSKDDFKNLCMIES 358

Query: 361 LTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAENKPKAGH 420
               ++ R  + GFEP   +P S LD       KPK   K + + E   S   N   +  
Sbjct: 359 RLGHVIERRVIEGFEPKKPIPVSILD------YKPKSQPKAQPSSEL--SPQRNSQPSSQ 410

Query: 421 RGQPTGQARTAKKGGT 436
           R   T + R A +GGT
Sbjct: 411 RKSRTEKLR-ASEGGT 425