Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 799 a.a., DEAD/DEAH box helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  339 bits (870), Expect = 2e-97
 Identities = 186/445 (41%), Positives = 267/445 (60%), Gaps = 28/445 (6%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F  LGLS   L+AIEE GY TP+PIQ+QAIP V  G+DV+  AQTGTGKTA FTLP++
Sbjct: 1   MTFADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTGKTASFTLPMI 60

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120
           ++LA G K +A   R+LIL PTRELA Q+ +N  LYG++  L  A++ GG  +N Q + +
Sbjct: 61  DILASG-KAKARMPRSLILAPTRELATQVSENFTLYGKYQKLSMALLIGGESMNEQQKVL 119

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
            +G D+L+ATPGRL+DL+ + ++    +++LV+DEADRMLDMGFI D+ +I+ LLP+ RQ
Sbjct: 120 DRGVDVLIATPGRLIDLFERGSILLRDVKVLVIDEADRMLDMGFIPDVERIVALLPKIRQ 179

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
            L FSAT   EIR LA   + NP E+ + P    A TVEQ +      +K + L +L++ 
Sbjct: 180 TLFFSATMDKEIRRLADAFLMNPKEVRIEPTQKVAETVEQALIMVKASEKREALRQLLRR 239

Query: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
                  +F   K   + L   L+  G    A+HG+  Q  RT  L  FK  EV+++V +
Sbjct: 240 ETVTNAFIFCNRKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMVCS 299

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
           D+AARGID+ ++  V NF++P   EDY+HRIGRTGRAG +G+A +L +  +A  L AIE 
Sbjct: 300 DVAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPEDAKYLRAIEN 359

Query: 361 LTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAEN--KPKA 418
           L    +P       +P  +L +  ++   L                   +VAE+  +PK 
Sbjct: 360 LLGKTIPP------DPQLELSDVAVEDVAL-------------------AVAEDDRRPKR 394

Query: 419 GHRGQPTGQARTAKKGGTHSEPKKP 443
           G +G+P   AR + +G   +E  +P
Sbjct: 395 GGKGRPERGARRSGRGSADAERPRP 419