Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 393 a.a., DEAD/DEAH box helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  337 bits (864), Expect = 4e-97
 Identities = 186/365 (50%), Positives = 244/365 (66%), Gaps = 3/365 (0%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F SL L  P+ +A+   GY   +PIQ  AIP  L G+DV+  AQTGTGKTA F LP+L+ 
Sbjct: 4   FASLDLIEPLARAVTALGYTVATPIQAGAIPPQLLGRDVLGIAQTGTGKTASFVLPLLQR 63

Query: 63  LAKGPKVRA-NQVRALILTPTRELAAQIQDNVMLYGRHLP-LKSAVVFGGVKINPQMQRM 120
           L K P+ R   + RALILTPTRELA QI +++   GR L  ++  VV GGV I  Q + +
Sbjct: 64  LTKDPQPRVPGRPRALILTPTRELAQQITESIGDLGRTLSAIRCGVVVGGVDILRQTRMV 123

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
            +G +ILVATPGRL DL N+ AV    +E+LVLDEADRMLDMGF   + KI  +LP KRQ
Sbjct: 124 QRGLEILVATPGRLQDLMNRKAVDLRAIEVLVLDEADRMLDMGFAPAVKKIAAVLPRKRQ 183

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
            ++FSAT   E+  L   L+N+PV + V+PA S A  ++Q +   +   K  +L+ L+ +
Sbjct: 184 TVMFSATLPNEVTGLVASLMNDPVRVEVAPAASVANRIDQRVLFVEQTNKRKLLLDLLGD 243

Query: 241 GNW-QQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVA 299
               ++ +VF RTKHGAN+L  +L E G+ +  IHGNKSQGAR RAL DFK+G+VR LVA
Sbjct: 244 ARKVERAIVFTRTKHGANKLGIFLLEYGVKSDVIHGNKSQGARQRALNDFKSGKVRALVA 303

Query: 300 TDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIE 359
           TDIAARGID+  +  V+NF+LP   E YVHRIGRT RAG  G A+SL +  E P L AIE
Sbjct: 304 TDIAARGIDVDGITHVINFDLPNEPESYVHRIGRTARAGAAGIALSLCAPQEMPYLKAIE 363

Query: 360 RLTQA 364
           ++ ++
Sbjct: 364 KVIKS 368