Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., DEAD/DEAH box helicase from Rhodopseudomonas palustris CGA009

 Score =  316 bits (810), Expect = 9e-91
 Identities = 190/475 (40%), Positives = 270/475 (56%), Gaps = 32/475 (6%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F++LGLS  +  A+   GY +P+PIQ QAIP VLA KDV+  AQTGTGKTA F LP+L
Sbjct: 1   MSFSNLGLSEKVQAAVAAAGYVSPTPIQQQAIPHVLARKDVLGIAQTGTGKTAAFVLPML 60

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120
            +L KG + RA   R LIL PTRELAAQ+++    YG    L  A++ GGV    Q  ++
Sbjct: 61  TMLEKG-RARARMPRTLILEPTRELAAQVKEQFDKYGAGQKLNVALLIGGVSFGDQDLKL 119

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
            +G D+L+ATPGRL+D   +  +    +E+L++DEADRMLDMGFI DI +I KL+P  RQ
Sbjct: 120 TRGVDVLIATPGRLLDHTERGGLLLTGVEMLIIDEADRMLDMGFIPDIERICKLVPFTRQ 179

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPA--DVKKKPDMLVKLV 238
            L F+AT  TEIR + +  ++NP +I VS   STA TV Q   P   +  +K + L +L+
Sbjct: 180 TLFFTATMPTEIRRITETFLHNPEKIEVSKPASTAVTVTQSQVPCGREPHEKRETLRRLI 239

Query: 239 KEG-NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRIL 297
           +   + +  ++F   K     LA  L   G +  A+HG+  Q ART AL  F+ G++ IL
Sbjct: 240 RGATDLKNAIIFCNRKREVALLAKSLQRHGFSVGALHGDMDQTARTAALEAFRKGDLPIL 299

Query: 298 VATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFA 357
           VA+D+AARG+DIP++  V NF++P   +DYVHRIGRTGRAG  G A+++V+  +   + A
Sbjct: 300 VASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRIGRTGRAGRTGTAVTIVAPSDQKSMAA 359

Query: 358 IERLTQALLPRVNL--------AGFEPTNQLP-------------ESKLDTRPLKPKKPK 396
           +E+L    + R  +        A  E   + P             E + + R  + +KP+
Sbjct: 360 VEKLIGQAISRAEVGPSVESEAANTEAEAERPSRSRRAAPEARQREPRREPREQRERKPR 419

Query: 397 KPKKVEGAGENKGSVAENKPKAGHR--GQPTGQARTAKKGGTHSEPKKPTKRPVR 449
           +  +        G+ A   P   H   G P     T+ + G HS       RPVR
Sbjct: 420 REPR--SPASTTGTTA---PPTAHASFGSPPPARDTSSEAGDHSHLPAFLLRPVR 469