Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., putative ATP-dependent RNA helicase RhlE from Phaeobacter inhibens DSM 17395

 Score =  348 bits (892), Expect = e-100
 Identities = 194/442 (43%), Positives = 274/442 (61%), Gaps = 15/442 (3%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL-E 61
           F+++GL   +L  I E GY  P+PIQ +AIP  L G+DV+  AQTGTGKTA F +P++ +
Sbjct: 9   FSTMGLPEKLLTRIAELGYTDPTPIQARAIPHALNGQDVLGLAQTGTGKTAAFGVPLIAQ 68

Query: 62  LLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMC 121
           ++  G K  A  VR L+L PTRELA QI  N+       P+K+ +V GGV INPQ+ R+ 
Sbjct: 69  MMQYGRKPAAKTVRGLVLAPTRELANQIAANLKGLTEGTPIKTGLVVGGVSINPQISRLS 128

Query: 122 KGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQN 181
           +G DIL+ATPGRL+D+ ++ A+     + LVLDEAD+MLD+GFI  + KI  LLPE+RQ 
Sbjct: 129 RGTDILIATPGRLLDILDRGALDLGSCDFLVLDEADQMLDLGFIHALRKIAALLPEQRQT 188

Query: 182 LLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEG 241
           +LFSAT   ++ E+A   + +PV I V+P    A  + Q ++     +K  +L +L+   
Sbjct: 189 MLFSATMPKQMNEIANSYLQSPVRIEVNPPGKAADKITQSVHFIAKAEKLSLLKELLGAH 248

Query: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
             ++ LVF RTKHG  +L   L+  G +AAAIHGNKSQG R RALA FK+GEV+ILVATD
Sbjct: 249 KDERTLVFGRTKHGMEKLMKTLSAAGFSAAAIHGNKSQGQRERALASFKSGEVKILVATD 308

Query: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
           +AARG+DIP +  V N+ELP + + YVHRIGRT RAG+ G+A++  +  E  EL AI++ 
Sbjct: 309 VAARGLDIPDVKYVYNYELPNVPDAYVHRIGRTARAGKDGQAVAFCAPDEMGELKAIQKT 368

Query: 362 TQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKP--------KKPKKVEGAGENKG---S 410
               +P   +A   P   LP++K         KP         + ++  G G  +G   S
Sbjct: 369 MNLNIP---VASGRPWEVLPDAKAPAGRRGGGKPGGGGKPGGHRRRRSGGGGGGQGGARS 425

Query: 411 VAENKPKAGHRGQPTGQARTAK 432
             +   + G +G+P GQ R A+
Sbjct: 426 GGQGAGQGGGQGKPGGQRRRAQ 447