Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 516 a.a., putative ATP-dependent RNA helicase RhlE from Phaeobacter inhibens DSM 17395

 Score =  303 bits (776), Expect = 9e-87
 Identities = 176/439 (40%), Positives = 252/439 (57%), Gaps = 31/439 (7%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F+ L L+  +LKAIEE GY +P+PIQ  AIP  L G+DV+  AQTGTGKTA FTLP++ L
Sbjct: 4   FSDLNLNPKVLKAIEEAGYESPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63

Query: 63  LAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122
           LA+G + RA   R+L+L PTRELAAQ+ +N   Y +HL L  A++ GGV    Q   + K
Sbjct: 64  LARG-RARARMPRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDTLIDK 122

Query: 123 GADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNL 182
           G D+L+ATPGRL+D + +  +    ++++V+DEADRMLDMGFI DI +I  L P  RQ L
Sbjct: 123 GVDVLIATPGRLLDHFERGKLILSDVKVMVVDEADRMLDMGFIPDIERIFGLTPFTRQTL 182

Query: 183 LFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIY-------PADVKKKPDMLV 235
            FSAT + EI  +    ++ P  + V+   +T+  + Q +          +  +K  +L 
Sbjct: 183 FFSATMAPEIERITNTFLSAPARVEVARQATTSENITQGVVLFKASRRDREGSEKRKLLR 242

Query: 236 KLV-KEG-NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGE 293
            L+ +EG      ++F   K   + +A  L + G  AA IHG+  Q  RT+ L  F+ G 
Sbjct: 243 HLIDQEGEKCTNAIIFCNRKTDVDIVAKSLKKYGYDAAPIHGDLDQSQRTKTLEGFREGS 302

Query: 294 VRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAP 353
           +R LVA+D+AARG+D+P +  V NF++P  AEDYVHRIGRTGRAG  G A+ +    +  
Sbjct: 303 LRFLVASDVAARGLDVPSVSHVFNFDVPSHAEDYVHRIGRTGRAGRDGSAMMICVPKDEK 362

Query: 354 ELFAIERLTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAE 413
            L  IERL Q  +PR+                   PLK K   +PK  +   +      E
Sbjct: 363 NLEDIERLVQNEIPRIE-----------------NPLK-KAKAEPKAKDSKDDASSETTE 404

Query: 414 NKPKAGHRGQPTGQARTAK 432
            K ++    +P+ ++  AK
Sbjct: 405 RKTRS---RRPSARSSAAK 420