Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., DEAD/DEAH box helicase from Pedobacter sp. GW460-11-11-14-LB5

 Score =  299 bits (766), Expect = 1e-85
 Identities = 176/447 (39%), Positives = 261/447 (58%), Gaps = 11/447 (2%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F    L+  IL A+ + GY   +PIQ +AI  VL+G+D+   A+TGTGKTA F LPIL  
Sbjct: 5   FEEFKLNRQILNAVADAGYTVATPIQEKAIAPVLSGQDIFGIAETGTGKTAAFVLPILMQ 64

Query: 63  LAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122
           L      + +  RALIL+PTRELA QI + V L+  +  L+S V+FGG+    Q +++ K
Sbjct: 65  LKYA---QGDNPRALILSPTRELAMQIAEQVKLFSTYTDLRSLVIFGGIGPKTQKEQIAK 121

Query: 123 GADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNL 182
           G DIL+ATPGR +DLY    +    L+ LVLDEAD+M+DMGFI  IH+IL+++P KRQNL
Sbjct: 122 GVDILIATPGRFLDLYLAGDINTQSLKFLVLDEADKMMDMGFIGSIHRILEIVPRKRQNL 181

Query: 183 LFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCI-YPADVKKKPDMLVKLVKEG 241
           LFSAT S  ++++A   +NNP+ I  S   + A  V Q + Y  + K K ++L  L+K  
Sbjct: 182 LFSATMSDLVQKIAGDFLNNPLVIEASAQATPAANVTQALYYVPNFKTKINLLQHLLKND 241

Query: 242 N-WQQVLVFMRTKHGANRLATYLNEQ--GLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
             + ++++F +TK  A+ + +++  +        IH NK Q  R  ++  FK G VR+LV
Sbjct: 242 EAFNRLIIFCKTKTVADNIYSFIERRYGAEHVRVIHANKGQNTRINSINSFKEGNVRVLV 301

Query: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
           ATD+A+RGID+  +  V+NF++P I EDYVHRIGRTGRA   G AI+  +  E   +  I
Sbjct: 302 ATDVASRGIDVSDVSHVINFDVPIIIEDYVHRIGRTGRAFAKGDAITFATDAEKYYIRKI 361

Query: 359 ERLTQALLPRVNLAGFEPTNQLP--ESKLDTRPLKPKKPKKPKKVEGAGENKGSVA--EN 414
           E+L +  +P   +      ++ P  E +   + +  +K K     +GA   K   A  E 
Sbjct: 362 EKLIRQYIPVAEIPEGVFIDETPYEERQHIAKEIDMQKRKDDPDFKGAFHEKKHAAAIEK 421

Query: 415 KPKAGHRGQPTGQARTAKKGGTHSEPK 441
           K +   + +   Q ++ KKG    + K
Sbjct: 422 KVREKAKAKAGKQVKSFKKGKKFDKKK 448