Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  354 bits (908), Expect = e-102
 Identities = 193/408 (47%), Positives = 266/408 (65%), Gaps = 6/408 (1%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F+ L L AP+ +A+E   ++  + IQ +AIP VL+G D+MA+AQTGTGKTA F LPIL
Sbjct: 1   MLFSQLSLPAPLQQALEALAFSEATQIQAEAIPLVLSGVDLMASAQTGTGKTAAFALPIL 60

Query: 61  ELLAKGPKVRAN--QVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ 118
             L    +   +  Q RAL+L PTRELA Q+   +  + R   L + +V+GGV I  Q Q
Sbjct: 61  AKLMGLAQAEGSDKQPRALVLVPTRELALQVHQGISDFARFTSLSAGLVYGGVSIEAQCQ 120

Query: 119 RMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEK 178
           ++  G D++VATPGRL+DL+ + A K D +  LV DEADRMLDMGF  +I +++ LLP +
Sbjct: 121 QLAAGVDLIVATPGRLLDLHRRGAAKLDGVAQLVFDEADRMLDMGFADEIAELMALLPSE 180

Query: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLV 238
           RQ LLFSAT   ++  L+   +  P  I+VSP NS ++ VEQ +Y  D ++K  +L  L+
Sbjct: 181 RQTLLFSATLDDKVLALSHRWLKQPKRIAVSPQNSASQDVEQRVYAVDSERKFALLSHLI 240

Query: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
            +G+WQ+VLVF R K  A++LA  L EQG+ A A HG+  QGAR + LADF+ GE+++LV
Sbjct: 241 NKGDWQRVLVFSRKKVAADKLAARLCEQGIMAKAFHGDLGQGAREQVLADFRRGEIKVLV 300

Query: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
           ATD+AARGIDI  L  VVN+ELP +A+DYVHRIGRTGRAG+ G A++L    +A  L  I
Sbjct: 301 ATDVAARGIDIESLDYVVNYELPYVAQDYVHRIGRTGRAGKQGVAVTLYCEEDALLLEEI 360

Query: 359 ERLTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGE 406
           E L    LP+  L GFEP      +K D  P +  K  + ++ +  G+
Sbjct: 361 EALLDKRLPQQWLPGFEP----DLTKADPNPRRNGKAAQKRRAKRRGQ 404