Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  364 bits (934), Expect = e-105
 Identities = 202/446 (45%), Positives = 280/446 (62%), Gaps = 6/446 (1%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F +L L   + +A +  GY T + +Q + IP  LAG+D+MA AQTGTGKTA F+  +L
Sbjct: 1   MNFDALPLDPLLAQAAKACGYETLTQVQAKVIPTALAGRDLMACAQTGTGKTAAFSFVLL 60

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120
           + L   P+    Q+ ALILTPTRELA Q+ D++  Y +   L +  V+GG  INPQ + +
Sbjct: 61  QRLLNQPRA-IGQLSALILTPTRELAIQVADSISRYSQFTELTTLAVYGGANINPQRKAL 119

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
            +G DILVATPGRL DL  Q+ +  + ++ L++DEADRMLDMGF+RDI +  +LL     
Sbjct: 120 ARGVDILVATPGRLFDLLGQHDLSLETVDQLIVDEADRMLDMGFVRDIERTKRLLCVSHS 179

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
            +LFSATF+ E++ LA  +++NP  I+V+ A+S  + +EQ IYP D ++K ++L +L+  
Sbjct: 180 TMLFSATFTPEVKALATKMLDNPEWINVTSASSGPQ-IEQKIYPLDARRKAELLAELIGR 238

Query: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
            NWQQVLVF+ TK  A RL   L   G+  A  HG+K+QGAR RAL  FKAGE+R+LVAT
Sbjct: 239 NNWQQVLVFVNTKESAERLHRELKLDGIKNAVFHGDKTQGARNRALEQFKAGELRVLVAT 298

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
           D+AARG+DI  LP V+N ELP   +DYVHRIGRTGRAG  G +IS V+  +   L AIE 
Sbjct: 299 DVAARGLDITALPLVINLELPDEPQDYVHRIGRTGRAGLSGVSISFVAKQDETALGAIEA 358

Query: 361 LTQALLPRVNLAGFEPTNQLPE--SKLDTRPLKPKKPKKPKKVEGAGENKGSVAENKPKA 418
           L    LPR    G+E    LP    +LDTR        K  K +  G   G   +++ KA
Sbjct: 359 LIGKTLPREVQPGYEMGAPLPARYRELDTRVTSKAAQPKRGKGQKFGSQDGRRGQSRAKA 418

Query: 419 GHRGQPTGQARTAKKGGTHSEPKKPT 444
             R  P  Q +T+    ++ + ++P+
Sbjct: 419 PQRKAP--QRKTSSDKASNDKARRPS 442