Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 488 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  390 bits (1002), Expect = e-113
 Identities = 212/451 (47%), Positives = 290/451 (64%), Gaps = 6/451 (1%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F +LGL   +L  +E+ GY+ P+PIQ +AIP  L GK+++AAAQTG+GKTA F LP+L
Sbjct: 1   MTFANLGLPNAVLTNLEQLGYSQPTPIQQEAIPLALKGKNLIAAAQTGSGKTATFVLPML 60

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120
             L +G   R  + RA+IL PTREL  Q+ D +  YG+ L L S  V+GGV +  Q Q++
Sbjct: 61  TTLMQGQTQRKKRARAIILAPTRELVLQVNDRIGEYGKGLGLVSMAVYGGVDVQAQKQQL 120

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
            +G DI+VATPGRL DLY Q A++FD++E+LVLDEADRMLDMGFI DI KIL  LPE+RQ
Sbjct: 121 IEGVDIVVATPGRLRDLYTQRAIRFDEVELLVLDEADRMLDMGFIEDITKILDTLPEERQ 180

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
           NLLFSAT S  +RELAK  V   + +SV+    +   +EQ I   D  KK  +L +L+K+
Sbjct: 181 NLLFSATLSRPVRELAKQAVPKAIHLSVTKNQDSQPDIEQWITTVDKDKKSALLSQLIKD 240

Query: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
             W Q L+F+ TKHGA +L + L ++G+ A  IH  ++Q  R + LADFKAG++  L++T
Sbjct: 241 NAWPQALIFIETKHGAAKLVSQLEKRGIQAECIHSGRTQAVREQILADFKAGKIAYLIST 300

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
            I+ARGIDI  LP V+N++LP  A++YVHRIGRTGRAG  G+AISLVS  +   L  IE 
Sbjct: 301 GISARGIDIDNLPLVINYDLPFPADEYVHRIGRTGRAGAKGEAISLVSKDDFKNLCMIES 360

Query: 361 LTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAENKPKAGH 420
               LL R  + GF P   +P S L+  P   ++  + +K   A  ++G  A  + K   
Sbjct: 361 RLDHLLERREIEGFAPRKPVPISILNYVPKAKREQAQGEKGSEAAASQGVKAPKEAKDKR 420

Query: 421 R-GQPTGQAR-----TAKKGGTHSEPKKPTK 445
           R  +P GQ++     T  KG +  +  +P K
Sbjct: 421 REDKPRGQSKSQGKATPYKGSSTDKKARPAK 451