Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  356 bits (913), Expect = e-102
 Identities = 198/409 (48%), Positives = 263/409 (64%), Gaps = 12/409 (2%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F+ L L   +   +   GY   +PIQ +AIPA+LAG+D++A A+TG+GKTA F LP+L+ 
Sbjct: 26  FSQLNLVKALQARLHHLGYQQATPIQAKAIPAILAGRDLLAGAKTGSGKTAAFALPLLQK 85

Query: 63  LAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAV--VFGGVKINPQMQRM 120
           L        N V AL+L PTRELA Q+ D+ + YG  L  ++ V  VFGGV +N QM  +
Sbjct: 86  LVGQRAGGGNHVGALVLVPTRELAQQVADSFISYGAELAPRAKVIAVFGGVSVNSQMLAL 145

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
             GADILVATPGRL+DL   NAVK  QL+ LVLDEADRML++GF  ++ +ILK LP+++Q
Sbjct: 146 RGGADILVATPGRLLDLLGSNAVKLSQLKALVLDEADRMLNLGFTEELGEILKQLPDQKQ 205

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
            LLFSATF  E+  L   L+ +PVEI +  A S    +EQ +Y  +   K  +L +L+K 
Sbjct: 206 TLLFSATFPEEVLSLTAKLLTDPVEIQMQEAQSA--DIEQRVYTVNRSNKTALLAELIKV 263

Query: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
             W+QVLVF   K   + LA  L ++G++A   HG+K+QGAR+R L  FK GE+ +L+AT
Sbjct: 264 RQWRQVLVFASAKRSCDHLAQKLEKRGISAQVFHGDKAQGARSRVLDGFKNGEITVLIAT 323

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
           DIAARGIDI +LP V+NFELP+   DY+HRIGR+GRAGE G+AISL+S  E      IE+
Sbjct: 324 DIAARGIDIDKLPVVINFELPRSPADYLHRIGRSGRAGETGEAISLISHDEYHHFKVIEK 383

Query: 361 LTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKP-KKVEGAGENK 408
             +  LPR    GFE   + P   LD     P +  KP  K EG G+ K
Sbjct: 384 KNKLRLPREQYPGFEADAEAP---LDC----PSRQDKPMAKPEGTGKKK 425