Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  570 bits (1470), Expect = e-167
 Identities = 302/453 (66%), Positives = 353/453 (77%), Gaps = 12/453 (2%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M FTSLGLSAPILKA+ +KGY TPSPIQ QAIPAVL+GKDVMAAAQTGTGKTAGFTLP+L
Sbjct: 1   MSFTSLGLSAPILKAVADKGYQTPSPIQAQAIPAVLSGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120
           ELL++GP+ R+ QVRAL+LTPTRELAAQI ++V  YG+HLPL+SAVVFGGV I+PQ+ ++
Sbjct: 61  ELLSQGPRARSKQVRALVLTPTRELAAQIAESVTTYGQHLPLRSAVVFGGVGISPQISQL 120

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
            +G DILVATPGRL+DLY Q+AV F QLE LVLDEADRMLDMGFI DI KIL +LP KRQ
Sbjct: 121 KRGVDILVATPGRLLDLYQQDAVSFSQLETLVLDEADRMLDMGFIHDIKKILAILPPKRQ 180

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
           NL+FSATFS EIR LAKGLVNNPVEISV+P NSTA TV+Q I P D  KK   LVKL+++
Sbjct: 181 NLMFSATFSDEIRTLAKGLVNNPVEISVTPRNSTANTVQQLICPVDKNKKSAALVKLIQQ 240

Query: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
           G+WQQVLVF RTKHGANRLA +L  +G+TAAAIHGNKSQGART+ALA+FK+G+VR+LVAT
Sbjct: 241 GDWQQVLVFSRTKHGANRLAKHLEAKGITAAAIHGNKSQGARTKALANFKSGDVRVLVAT 300

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
           DIAARG+DI QLPQVVNF+LP + EDYVHRIGRTGRAG  GKA+SLVS  EA  L  IER
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGADGKAVSLVSDEEAKLLADIER 360

Query: 361 LTQALLPRVNLAGFEPTNQLPESKLDTR---PLKPKKPKKPKKVEGAGENKGSVAENKPK 417
           L   LLPR  + GFEPT+ LPE+ L  +     K  +  KPK       N+ S  +   K
Sbjct: 361 LIGKLLPRAEVEGFEPTHTLPETNLTPKRHGQHKGPRNPKPKSNSQRSSNRSSNGQRSDK 420

Query: 418 AGH-------RGQPTGQARTAKKGGTHSEPKKP 443
           AG        +G   GQ R  ++ G  +   KP
Sbjct: 421 AGQPRRGDQAQGNKEGQGR--RRTGASTGTSKP 451