Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 599 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  283 bits (724), Expect = 1e-80
 Identities = 152/384 (39%), Positives = 235/384 (61%), Gaps = 5/384 (1%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F  LGLS P+L+A++E GY  P+PIQ  +I  ++AGKD++  AQTGTGKT  F LP+L  
Sbjct: 8   FRELGLSEPLLRALDELGYEKPTPIQAASIDPLMAGKDILGQAQTGTGKTGAFALPLLNA 67

Query: 63  LAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLP-LKSAVVFGGVKINPQMQRMC 121
           +        N  + L+L PTRELA Q+ +    Y + +  L    ++GG  ++ Q+  + 
Sbjct: 68  IDPN----RNVPQILVLAPTRELAVQVAEAFGSYSKFMKGLHVLPIYGGQSMHQQLNALR 123

Query: 122 KGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQN 181
           +G  I+V TPGR+MD   +  +K + L  LVLDEAD ML MGFI DI  IL+  P++RQ 
Sbjct: 124 RGPQIVVGTPGRVMDHMRRGTLKLETLNALVLDEADEMLKMGFIDDIEWILEHTPQERQL 183

Query: 182 LLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEG 241
            LFSAT   +I+ +A   +  PV IS++ +++T  ++EQ         K + LV++++  
Sbjct: 184 ALFSATMPEQIKRVANKYLQTPVHISIAASHTTVESIEQRFVQVSQHNKLEALVRVLEVE 243

Query: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
           N + +++F+RT++    LA  L  +G  ++ +HG+ +Q AR RA+   K G++ IL+ATD
Sbjct: 244 NTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKRGKLDILIATD 303

Query: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
           +AARG+D+ ++  V+N+++P   E YVHRIGRTGRAG  G AI  V+  E   L  IER 
Sbjct: 304 VAARGLDVERIGHVINYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTIERA 363

Query: 362 TQALLPRVNLAGFEPTNQLPESKL 385
           T++ +  +N+   E   +   S+L
Sbjct: 364 TKSRISPMNVPSPETVAERRLSRL 387