Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 474 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  381 bits (979), Expect = e-110
 Identities = 218/454 (48%), Positives = 280/454 (61%), Gaps = 24/454 (5%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F  LGL+  ILKA+ E GY   +PIQ QAIP VL GKD+ A AQTGTGKTA FTLP++
Sbjct: 1   MRFDELGLAPEILKAVTEMGYAEATPIQQQAIPLVLQGKDLKACAQTGTGKTAAFTLPLI 60

Query: 61  ELL----AKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQ 116
           + L       P    + VRAL+L PTRELA Q+ ++V  Y ++   +S  +FGGV I PQ
Sbjct: 61  QRLLHLDTASPSPAKHPVRALMLAPTRELALQVYESVKSYTKYTHFRSICLFGGVDIKPQ 120

Query: 117 MQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLP 176
           +  M KG + +VATPGRL+D   Q +V F+Q++ LVLDEADRMLDMGFI DI +IL +LP
Sbjct: 121 IAEMKKGVEFVVATPGRLLDHVEQKSVSFNQVQALVLDEADRMLDMGFIPDIQRILNMLP 180

Query: 177 EKRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVK 236
           + RQ+LLFSATFS EI+ LA  ++ +P+ + V+  N    T+   ++P    +K D+L+K
Sbjct: 181 KTRQSLLFSATFSNEIQRLADTMLQSPILVEVARRNQVNDTITHRVHPVAETRKKDLLIK 240

Query: 237 LVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRI 296
           L++ G   Q LVFMRTK G  RLA  L   G+ A +IHG+KSQ  R +AL  FK G  ++
Sbjct: 241 LLRSGEITQTLVFMRTKQGCGRLARELERAGIAADSIHGDKSQNERIKALDAFKNGGCKV 300

Query: 297 LVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELF 356
           LVATD+AARG+DI  LP V+NFELP   EDYVHRIGRTGRAG  G AISLV A E   L 
Sbjct: 301 LVATDVAARGLDIDHLPYVINFELPHTPEDYVHRIGRTGRAGRQGNAISLVCAHEVGYLA 360

Query: 357 AIERLTQALLPRVNLAGFEPTNQL---PESKLDTRPLKPKKPKKPKKVEGAGENKGSVAE 413
            IE+L +  + +V +AGFEP       P S    R  +   P +P     AG +K  V  
Sbjct: 361 DIEKLIKMQIEQVAVAGFEPEMDYEYPPGSGKKRRAHETHAPSQPV----AGRSKPPVKR 416

Query: 414 NKPKAGHRGQPTGQARTAKKGGTHSEPKKPTKRP 447
           N                AK G   S+P +P   P
Sbjct: 417 NN-------------MIAKDGFDFSKPYEPKAAP 437