Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 473 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  435 bits (1119), Expect = e-126
 Identities = 248/455 (54%), Positives = 313/455 (68%), Gaps = 18/455 (3%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M FT LGL A IL+AI E+GY  P+PIQ QAIPAVLAG+D+MA AQTGTGKTAGFTLPIL
Sbjct: 1   MLFTDLGLKAEILRAIAEQGYTEPTPIQQQAIPAVLAGRDLMACAQTGTGKTAGFTLPIL 60

Query: 61  ELLAKG-----PKVR-ANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKIN 114
           +LL++      P  R A + R LIL PTRELA Q++++V  YG+HLPLKS  +FGGV +N
Sbjct: 61  QLLSQAQAGESPLNRLARKPRVLILAPTRELALQVEESVRTYGQHLPLKSMSMFGGVGMN 120

Query: 115 PQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKL 174
           PQ+  + +G DILVA PGRL+D  NQ  +    +EILVLDEADRMLDMGFIRDI KIL L
Sbjct: 121 PQIAALKRGVDILVACPGRLLDHINQRTLDLSGIEILVLDEADRMLDMGFIRDIRKILAL 180

Query: 175 LPE--KRQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPD 232
           LP   KRQNLLFSATFS EI+ELA+  +++P  I V+  N+T  TV Q +   D +KK D
Sbjct: 181 LPPNGKRQNLLFSATFSDEIKELARSFLHDPQSIEVARRNTTVETVSQKVIHVDREKKKD 240

Query: 233 MLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAG 292
           +L+ L +   W QVL+F RTKHGA+ L+  L+++G+ +AA+HGNK+QGAR RAL +FK G
Sbjct: 241 VLLHLFENRGWNQVLIFTRTKHGADALSRRLDKEGIRSAALHGNKTQGARVRALTEFKEG 300

Query: 293 EVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEA 352
           ++  LVATDIAARGIDI QLP VVN+ELP +AEDYVHRIGRTGRAG  G+AISLV   E 
Sbjct: 301 KLVALVATDIAARGIDIDQLPYVVNYELPNVAEDYVHRIGRTGRAGAEGEAISLVCHDER 360

Query: 353 PELFAIERLTQALLPRVNLAGFEPT-NQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSV 411
             L +IERL +  L +  L GFEP+ N  P    +    +  + ++  + +G G+   S 
Sbjct: 361 DNLRSIERLIKKDLEKEVLPGFEPSANPTPAPPQNRGGQRQGQGQRQGQRQGQGQPGRSF 420

Query: 412 AEN--------KPKAGHRGQPTGQARTAKKGGTHS 438
             N           +G RGQ  G+ R+   GG  S
Sbjct: 421 GNNGGGNRSGGNGGSGGRGQ-GGEGRSRSGGGAAS 454