Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., DNA/RNA helicase, superfamily II from Dechlorosoma suillum PS

 Score =  431 bits (1107), Expect = e-125
 Identities = 232/442 (52%), Positives = 306/442 (69%), Gaps = 8/442 (1%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F  L L  P+L+A++  GY TP+P+Q +AIPAVLAG D+MAAAQTGTGKTA F LP+L
Sbjct: 1   MTFADLDLVPPLLEALDVLGYQTPTPVQEKAIPAVLAGGDLMAAAQTGTGKTASFALPLL 60

Query: 61  ELLAKGPKVRA-NQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQR 119
           + LA  P+  A N  RALIL PTRELA Q+ D+ + YG+ L L+S  V+GGV INPQM +
Sbjct: 61  QRLAHDPEPTASNSTRALILVPTRELAQQVCDSFVAYGQFLVLRSYAVYGGVSINPQMMK 120

Query: 120 MCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKR 179
           + KG DILVATPGRL+DL+ QNAV+FDQ+  LVLDEADRMLD+GF R+++ +  LLP++R
Sbjct: 121 LRKGVDILVATPGRLLDLHRQNAVRFDQVRTLVLDEADRMLDLGFARELNALFALLPKQR 180

Query: 180 QNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVK 239
           Q LLFSATFS  IR +A  L+  P+ I  +  N+TAR ++Q + P D K+K  +   L K
Sbjct: 181 QTLLFSATFSDAIRSMADQLLKKPLSIETARPNATARGIKQWVVPVDKKRKSALFCHLYK 240

Query: 240 EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVA 299
              W QVLVF++T+ G + L   L  +G+ A +IHG+K Q AR RAL  FKAG+VR+LVA
Sbjct: 241 HKKWDQVLVFVKTRKGVDELVETLTAKGIAAESIHGDKPQPARLRALESFKAGQVRVLVA 300

Query: 300 TDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIE 359
           TD+A+RG+DI  LP+VVNF+LP + EDYVHRIGRT RAG  G+A+SLV A E   L AIE
Sbjct: 301 TDVASRGLDIDDLPRVVNFDLPIVPEDYVHRIGRTARAGASGEAVSLVCADEVNLLGAIE 360

Query: 360 RLTQALLPRVNLAGFEPTNQLPESKLDTRPL-KPKKPKKPKKVE---GAGENKGSVAENK 415
            L    L R+   GFEP +++PE+    + + KPKKPK PK ++   G+G ++G    + 
Sbjct: 361 VLIGQPLSRIEQHGFEPDHRVPETGPAGQVIKKPKKPKMPKHLDYGIGSGPSRGKGPGSA 420

Query: 416 PKAGHR---GQPTGQARTAKKG 434
              G R   G+P G+A    +G
Sbjct: 421 KAPGGRRGAGRPGGKAAPKARG 442