Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  363 bits (931), Expect = e-105
 Identities = 190/401 (47%), Positives = 261/401 (65%), Gaps = 4/401 (0%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F++L L+  ++  + E GY  P+PIQ++AIPA+L  +DVMA AQTGTGKTA F LPIL
Sbjct: 1   MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60

Query: 61  ELLAKGPKV--RANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ 118
           +LL    +    A  +RAL+L PTRELA Q+Q + + Y +   ++  + +GGV I  Q  
Sbjct: 61  QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120

Query: 119 RMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEK 178
               G D+L+ATPGRL+D   Q A+  +QL  LV DEADRMLDMGF+ +I  +LK +P +
Sbjct: 121 VFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180

Query: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLV 238
           RQ LLFSAT    I   +K L+ +P  I V+  N+TA  +EQ +Y  D  +K + +  LV
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAIDSDRKTEFVSHLV 240

Query: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
           +  NWQQVL+F RTK G ++L   LN+ G+   + HG+ SQGAR + L +FK G V++LV
Sbjct: 241 RSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLV 300

Query: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
           ATD+AARG+DI +L  V+NFELP IAEDY+HRIGRTGRAG  G AI+L S  +A  L  +
Sbjct: 301 ATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEV 360

Query: 359 ERLTQALLPRVNLAGFEP--TNQLPESKLDTRPLKPKKPKK 397
           E L    LP+    GFEP     LPE + +++  + ++ KK
Sbjct: 361 ETLLDKRLPQQWYPGFEPDFNKMLPEPRRNSKAAQKQRAKK 401