Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  350 bits (898), Expect = e-101
 Identities = 188/410 (45%), Positives = 261/410 (63%), Gaps = 13/410 (3%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F  LG+ AP+   + E GY +P+P+Q   IPAVL+G+DV+A A TG+GKTA F LP+L+ 
Sbjct: 11  FAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQR 70

Query: 63  L--AKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHL--PLKSAVVFGGVKINPQMQ 118
           L  AK     A  VR L+L PTRELA Q+ D+ + Y  H    LK    FGGV +N QMQ
Sbjct: 71  LSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQMQ 130

Query: 119 RMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEK 178
            +  GAD+LVATPGRL+DL   NA+K  Q+   VLDEADRML +GF  ++ ++L  LP +
Sbjct: 131 SLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPRQ 190

Query: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLV 238
           +Q LLFSATF  E+R L   L++ P+E  +     +  T+EQ +   + ++K  +L  L+
Sbjct: 191 KQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQES--TIEQRVITVNREQKTALLAHLI 248

Query: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
           K+  W Q L+F+  K+  N LA  L+++G++A   HG+K+QGARTR L  FK GE+ +L+
Sbjct: 249 KQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEISVLI 308

Query: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
           ATDIAARGIDI +LP V+NF+LP+   DY+HRIGR+GRAGE G A++L+S  E      I
Sbjct: 309 ATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHHFGVI 368

Query: 359 ERLTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENK 408
           E+  +  L R  + GFE   ++P        L  +KP+   K EG G+ K
Sbjct: 369 EKKNKIKLVREQIPGFEANAEIP-----LEVLAQEKPQ--AKPEGTGKKK 411