Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  415 bits (1066), Expect = e-120
 Identities = 214/449 (47%), Positives = 298/449 (66%), Gaps = 10/449 (2%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F+ LGL + ++KA+ E GY +P+PIQ QAIP++LAGK+V+AAAQTGTGKTA F LP+L
Sbjct: 1   MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120
              A  PK+R  +VR++ILTPTRELA Q++ N+  Y ++LPL +  ++GGV   PQ +R+
Sbjct: 61  HRFADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRL 120

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
            +G D+LVATPGRL+D+Y Q A++FD++ +LVLDEADRMLDMGFI DI+ I++ LPE+RQ
Sbjct: 121 IEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQ 180

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
           NLLFSAT S +++ LAK  + + +EI +S  N+ +  ++Q +   D  +K  +L  L+KE
Sbjct: 181 NLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTTVDKDRKSALLSHLIKE 240

Query: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
            NW Q L+F++TKHGA +L + L ++G+ A A H  +SQ  R + L DFKAG+V  LVAT
Sbjct: 241 NNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVAT 300

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
            + +RGIDI  L +V+N++LP  A+DY+HRIGRTGRAG  G+AIS VS  +   L AIER
Sbjct: 301 GVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIER 360

Query: 361 LTQALLPRVNLAGFEPTNQLPESKLDTRPLK-PKKPKKPKKVEGAGENKGSVAENKPKAG 419
               ++ R N+ GFEP   +P S LD  P    +   KP       +     +  KP   
Sbjct: 361 RLGHIIERKNIEGFEPKKAVPISILDFVPKSASRSAHKPNNTAAVKDQASPYSSGKP--- 417

Query: 420 HRGQPTGQARTAKKGGTHSEPKKPTKRPV 448
                T +A  AKK    S   KP  + V
Sbjct: 418 ----GTFEATQAKK--HRSAKAKPQSKQV 440