Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  373 bits (958), Expect = e-108
 Identities = 209/451 (46%), Positives = 283/451 (62%), Gaps = 6/451 (1%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F +LGLS+P+L AI E GY   + +Q Q IP  L GKD+MA AQTGTGKTA F LP+L
Sbjct: 1   MKFDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVL 60

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120
           E LA  P  +   +RAL++TPTRELA Q+  N+  Y + LPLK+  V+GG  +NPQ + +
Sbjct: 61  EQLAAKPADKP-LLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGV 119

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
            +G DILVATPGRL D+  Q  +    +  LV+DEADRMLD+GF+RDI K+ +L+    Q
Sbjct: 120 EQGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQ 179

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
            +LFSAT+S  +++L+  ++N P  ++V+  N+TA TVEQ +Y  D ++K ++L +LV  
Sbjct: 180 TMLFSATYSDAVKQLSHKMLNQPQWVNVAE-NTTASTVEQLVYRVDKRRKAELLSELVGR 238

Query: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
            NW+QVLVF  TK  A  L   L   G++A   HG+K+QGAR R L DFKAG++R+LVAT
Sbjct: 239 NNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVAT 298

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
           D+AARG+DI  LP V+N ELP +AEDYVHRIGRTGRAG  G+AIS VS  +   L  IE 
Sbjct: 299 DVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEA 358

Query: 361 LTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKP---KKPK-KVEGAGENKGSVAENKP 416
           L    LP     G+E    LP    D   +  K     K PK +  G     G  +E++ 
Sbjct: 359 LIGEKLPVTVQPGYEEGTPLPARYRDLPVVTTKTKWSYKAPKDRTIGKSSAGGKSSESQA 418

Query: 417 KAGHRGQPTGQARTAKKGGTHSEPKKPTKRP 447
           +A       G+    K   + S+P++   +P
Sbjct: 419 RARKSPSREGKYSKDKAKVSPSQPQRSGGKP 449