Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 447 a.a., ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  303 bits (777), Expect = 6e-87
 Identities = 179/429 (41%), Positives = 256/429 (59%), Gaps = 15/429 (3%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F  LGL+A + KA+  +    P+ +Q  AIPA+LAG+D++A +QTG+GKT  F LP+L++
Sbjct: 19  FAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGLPLLQI 77

Query: 63  L-------AKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHL----PLKSAVVFGGV 111
           L            V A +  AL+L PTRELA Q+ + +      L    PL   ++ GGV
Sbjct: 78  LWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQLSTSAPLNIQLLCGGV 137

Query: 112 KINPQMQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKI 171
            +  Q+  +     ++VATPGRL+DL  Q+ +  D ++ LVLDEADR+L+MGF  D+ K+
Sbjct: 138 ALEQQLADLSAKPQLVVATPGRLLDLCTQSHISLDAIKHLVLDEADRLLEMGFWPDMQKL 197

Query: 172 LKLLPEKRQNLLFSATFSTEIRELA-KGLVNNPVEISVSPANSTARTVEQCIYPADVKKK 230
           + ++P+++Q LLFSAT    +  LA K L N+P+++  S  N+    +E+ +Y  +   K
Sbjct: 198 MAMMPKRKQTLLFSATLPEALDSLAGKLLTNDPLKVEASTRNAVVGEIEEQLYLVNKGSK 257

Query: 231 PDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFK 290
              L+ L+K+  W QVLVF+  +  A+ +A  L + G+ AAA+HG K Q  R++ LADFK
Sbjct: 258 AQALIALLKQYQWPQVLVFISARDDADAIAKRLVKAGINAAALHGEKDQTVRSQTLADFK 317

Query: 291 AGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAI 350
           A  +++LVATD+ ARGI +  LP V+N +LP  A  YVHRIGRT RAG  G AISLV   
Sbjct: 318 ADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGAKGLAISLVCHG 377

Query: 351 EAPELFAIERLTQALLPRVNLAGFEPTNQLPESKLDTRPLK--PKKPKKPKKVEGAGENK 408
           E P L AI  LT   LP V LA F  T++  E  +D    K  PK+P + K+      NK
Sbjct: 378 EMPNLTAIRNLTARALPLVFLADFPVTDKPSEKIIDGAENKVIPKRPPRDKQANRRSINK 437

Query: 409 GSVAENKPK 417
            SV   K K
Sbjct: 438 HSVKAFKGK 446