Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., ATP-dependent RNA helicase RhlE (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  295 bits (756), Expect = 2e-84
 Identities = 167/426 (39%), Positives = 242/426 (56%), Gaps = 11/426 (2%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F  L LS  +L A++  GY  P+P+Q  AIP  LAG+DV+A A TGTGKTA F LP+L
Sbjct: 1   MTFADLSLSPRLLAALDGMGYRQPTPVQRGAIPPALAGEDVLALAATGTGKTAAFVLPML 60

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120
           + L  GP+     VRAL++ PTRELA Q  D+V   G    L+S  ++GGV +  Q  R+
Sbjct: 61  QRLMDGPR---GAVRALVVAPTRELAEQTHDHVRRLGSMSRLRSTTIYGGVGVVAQALRL 117

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
             G +++V  PGRL+D   +  +    LE+LVLDE D + D+GF+ D+  +L ++P   Q
Sbjct: 118 RAGVEVVVGCPGRLLDHIRRGNLDLSSLEVLVLDEGDSLFDLGFLADVRMLLGMVPATCQ 177

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
            +LFSAT    +R LA   +  PV + V  A   A TV   +YP     +  +L   ++ 
Sbjct: 178 RMLFSATMPDAVRVLAAEALRQPVTVQVD-AVQPASTVHHALYPVPAHLRTPLLKTFLRS 236

Query: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
           G    V+VF+RT+HGA RL   L+  G +   + G  SQ  R  AL  F+ G   +LVAT
Sbjct: 237 GPEGSVVVFVRTRHGARRLWQQLDNVGFSVTCLQGKLSQRRRLAALEGFRDGRYDVLVAT 296

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
           D+AARG+DI Q+  VVN+++P  A+ Y+HR+GRTGRA   G A++ V+  +  ++  IER
Sbjct: 297 DVAARGLDISQVTHVVNYDVPSTADAYIHRVGRTGRAARNGTAMTFVTPADEAQVRNIER 356

Query: 361 LTQALLPRVNLAGFEPTNQL--PESKLDTRPLKPKKPKKPKKVEGAGENKGSVAENKPKA 418
           +   ++PR  LA F+    +  PE     RP  P  P++P+   G        A+ +P+ 
Sbjct: 357 VLGTVIPRERLADFDYGAPVRGPEG---ARPAMP--PRQPRLPAGKRPAAPQEAQEQPRR 411

Query: 419 GHRGQP 424
           G    P
Sbjct: 412 GRPRPP 417