Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 493 a.a., DEAD/DEAH box helicase domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  317 bits (813), Expect = 4e-91
 Identities = 180/436 (41%), Positives = 258/436 (59%), Gaps = 27/436 (6%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F+ L L   +LKAI E GY+TP+PIQ +AIP  L G+DV+  AQTGTGKTA FTLP++ +
Sbjct: 4   FSDLNLDPKVLKAISEAGYDTPTPIQAEAIPPALEGRDVLGIAQTGTGKTASFTLPMITM 63

Query: 63  LAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122
           L KG + RA   R+L+L PTRELAAQ+ +N  +Y +H  L  A++ GGV    Q   + K
Sbjct: 64  LRKG-RARARMPRSLVLAPTRELAAQVAENFDIYAKHTKLTKALLIGGVSFKEQDLLIDK 122

Query: 123 GADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNL 182
           G D+L+ATPGRL+D + +  +    ++++V+DEADRMLDMGFI DI KI +L P  RQ L
Sbjct: 123 GVDVLIATPGRLLDHFERGKLILTDVKVMVVDEADRMLDMGFIPDIEKIFQLTPFTRQTL 182

Query: 183 LFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIY---------PADVKKKPDM 233
            FSAT + EI  +    ++NP  + V+  ++T+ T+ Q +              K+K +M
Sbjct: 183 FFSATMAPEIERITNTFLSNPARVEVARQSTTSETITQGLVQFKPSRRDRATAFKEKREM 242

Query: 234 LVKLV-KEGN-WQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKA 291
           L  L+ +EG+  +  ++F   K   + +A  L + G  AA IHG+  Q  RT+ L  F+ 
Sbjct: 243 LRALIEREGDGCRNAIIFCNRKMDVDVVAKSLIKHGYDAAPIHGDLEQSQRTKTLDQFRD 302

Query: 292 GEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIE 351
           G ++ LVA+D+AARG+DIP +  V NF++P  AEDYVHRIGRTGRAG  G  + L    +
Sbjct: 303 GTLKFLVASDVAARGLDIPNVSHVFNFDVPSHAEDYVHRIGRTGRAGRKGTTLMLAVPAD 362

Query: 352 APELFAIERLTQALLPRVNLAGF--------------EPTNQLPESKLDTRPLKPKKPKK 397
              L AIE L +  +PR+   G               EP  +   S+  T+P +P K   
Sbjct: 363 DKLLAAIEDLVKLEIPRIEAPGISAPQGGRSKDEERPEPEKRERRSRRRTKP-EPAKANA 421

Query: 398 PKKVEGAGENKGSVAE 413
           P +   A + + +VAE
Sbjct: 422 PAQAPVAAQAETAVAE 437