Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., ATP-dependent RNA helicase from Caulobacter crescentus NA1000

 Score =  362 bits (928), Expect = e-104
 Identities = 207/452 (45%), Positives = 279/452 (61%), Gaps = 16/452 (3%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F+ LGL+ P+LKA+ EKGY  P+PIQ QAIP VL GKD++  AQTGTGKTA F LPIL+ 
Sbjct: 4   FSDLGLAKPLLKALAEKGYKEPTPIQAQAIPVVLQGKDLLGIAQTGTGKTAAFALPILQR 63

Query: 63  LAKGPKVRANQ-VRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMC 121
           LA+  K    +  R L+L+PTRELA QI +N   Y  H+ L    ++GGVK  PQM+ + 
Sbjct: 64  LAEDRKPAPRRGCRCLVLSPTRELATQIAENFKAYAVHMGLSVHTIYGGVKYGPQMKALA 123

Query: 122 KGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQN 181
            G D+LVATPGRLMD   + +      EI VLDEAD+MLD+GF+  I KI   L + RQN
Sbjct: 124 GGIDVLVATPGRLMDHMAEKSAIVSGTEIFVLDEADQMLDLGFVVPIRKIAAQLTKNRQN 183

Query: 182 LLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEG 241
           L FSAT  +EI +LA  L+NNPV++SV+P  +T   ++Q +   + ++K  +L +L  + 
Sbjct: 184 LFFSATMPSEIGKLAGELLNNPVQVSVAPQATTVERIDQRVLFIEAQRKRPLLAELFADT 243

Query: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
           ++ + +VF RTK GA+R+A YLN  G+ AA+IHG+K+QG R RALA FKAGE+R LVATD
Sbjct: 244 SFSRTIVFTRTKRGADRVAKYLNAAGIEAASIHGDKTQGQRERALAAFKAGEMRALVATD 303

Query: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
           IAARGID+  +  V+N+ELP + E YVHRIGRT R G+ G AIS  +  E   L  I++ 
Sbjct: 304 IAARGIDVNDVSHVINYELPNVPEAYVHRIGRTARKGKDGIAISFCADDERNLLKDIQKA 363

Query: 362 TQALLP--------RVNLAGFEPTNQLPESK-LDTRPLKPK----KPKKPKKVEGAGENK 408
           T+  +P        ++  A       +P  K +D R   P+       + K+    G   
Sbjct: 364 TRQTIPSFDRRNDKQLAAAAAVADKLVPAEKYVDPRKADPRNNVPSELRRKRNRNGGGGG 423

Query: 409 GSVAENKPKAGHRGQPTGQARTAKKGGTHSEP 440
           G  AE   KA  RG   GQ +   K G  + P
Sbjct: 424 GGRAEGAQKAQGRG--PGQGKAGAKPGQKAGP 453