Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 374 a.a., putative ATP-dependent RNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  362 bits (929), Expect = e-104
 Identities = 186/372 (50%), Positives = 259/372 (69%), Gaps = 3/372 (0%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F  L ++ PILKAIEEKGY  P+PIQ +AIP  LA KD++  AQTGTGKTA F +PI+
Sbjct: 1   MTFKELNITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPII 60

Query: 61  ELLA--KGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ 118
           + L   KG   R+ +++ALILTPTRELA QI + +  Y ++  ++  V+FGGV   PQ+ 
Sbjct: 61  QHLHLNKGEGKRS-EIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVD 119

Query: 119 RMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEK 178
            + KG DILVATPGRL+DL NQ  ++ D ++  VLDEADRMLDMGFI DI +IL  LP++
Sbjct: 120 MLHKGIDILVATPGRLLDLMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKE 179

Query: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLV 238
           +Q L FSAT    I  L   L+ NPV+I V+P +ST  +++Q +Y  + K+K  +L+ ++
Sbjct: 180 KQTLFFSATMPDTIIALTNSLLKNPVKIYVTPKSSTVDSIKQLVYFVEKKEKSLLLISIL 239

Query: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
           ++   + VL+F RTKH A+++   L + G+ + AIHGNKSQ AR  AL +FK+G+ R++V
Sbjct: 240 QKSEDRSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299

Query: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
           ATDIA+RGIDI +LP V+N++LP + E YVHRIGRTGRAG  G A++  S  E  ++  I
Sbjct: 300 ATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGMALTFCSQEERKQINDI 359

Query: 359 ERLTQALLPRVN 370
           ++LT   L R +
Sbjct: 360 QKLTGKKLNRAD 371