Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., DEAD/DEAH box helicase from Burkholderia phytofirmans PsJN

 Score =  383 bits (983), Expect = e-111
 Identities = 221/470 (47%), Positives = 292/470 (62%), Gaps = 34/470 (7%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F   GL+  ILKA++E GY  P+PIQ QAIP VLAG+D+M AAQTGTGKTA F+LPI++ 
Sbjct: 13  FDQFGLAPDILKAVKESGYTIPTPIQEQAIPVVLAGRDMMGAAQTGTGKTASFSLPIIQR 72

Query: 63  LAKGPKVRANQ----VRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ 118
           L       A+     VRALILTPTRELA Q+  NV  Y +H  L+SAVVFGGV +NPQ +
Sbjct: 73  LLPQASTSASPARHPVRALILTPTRELADQVAANVQAYAKHTALRSAVVFGGVDMNPQSE 132

Query: 119 RMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEK 178
           ++ +G +IL+ATPGRL+D   Q      Q++ILVLDEADRMLDMGF+ D+ +IL LLP++
Sbjct: 133 QLRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLPDLQRILNLLPKE 192

Query: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLV 238
           RQ LLFSATFS EI++LA   + NP  I V+ +NSTA  V Q +Y      K   +V+L+
Sbjct: 193 RQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTATNVTQVVYEVAEGDKTGAVVQLI 252

Query: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
           +E   +QV+VF  +K GA+RLA  L   G+ A AIHG+++Q  R +AL  FK GE+  LV
Sbjct: 253 RERGLKQVIVFCNSKIGASRLARSLERDGVVATAIHGDRTQNERMQALDAFKRGEIEALV 312

Query: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
           ATD+AARG+DI +LP V+NF+LP  AEDYVHRIGRTGRAG  G A+SL S  E  +L  I
Sbjct: 313 ATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSLCSPNERKQLADI 372

Query: 359 ERLTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAENKPKA 418
           E+L +  L    L    P     E          + P++ +  EG  E++GS       +
Sbjct: 373 EKLIKRPLDVQRLTVEAPVRHHHEE---------RAPRRERSSEGR-EDRGSRRRTGASS 422

Query: 419 G-------HRGQPT------------GQARTAKKGGTHSEPKKP-TKRPV 448
           G       HR QP                R  ++    + P+KP +K+P+
Sbjct: 423 GSYDRPHHHRAQPVDDFFLKPYEPSPSSVRKIEEAAAAAAPQKPASKQPL 472