Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  372 bits (956), Expect = e-107
 Identities = 205/435 (47%), Positives = 282/435 (64%), Gaps = 7/435 (1%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F S      IL+AI + GY   +PIQ QAIPA+  G+DV+A+AQTGTGKTA F LPIL
Sbjct: 1   MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPIL 60

Query: 61  ELLAKGP-KVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQR 119
           + + + P +   +  R LILTPTRELAAQ+ DNV  Y ++L      ++GGVK+  Q Q+
Sbjct: 61  QKMVENPSETLKSNARVLILTPTRELAAQVADNVEAYSKYLNFSVLTIYGGVKVETQAQK 120

Query: 120 MCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKR 179
           + +GADI+VATPGRL++      +    ++ LVLDEADRMLDMGF  DI KIL+ + +KR
Sbjct: 121 LKRGADIIVATPGRLLEHLTACNLSLSSIDFLVLDEADRMLDMGFNADIQKILQAVNKKR 180

Query: 180 QNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVK 239
           QNLLFSATFS+ +++LA  ++  P  IS    N+TA TV Q +YP + ++K ++L +L+ 
Sbjct: 181 QNLLFSATFSSAVKKLANDMMVKPQVISADKQNTTADTVSQVVYPVEQRRKRELLSELIG 240

Query: 240 EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVA 299
           + NWQQVLVF  T+  A+ L   LN  G+ +  +HG K+QG+R RAL +F +G+VR+LVA
Sbjct: 241 KKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVA 300

Query: 300 TDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIE 359
           T++AARG+DIP L  VVNF+LP +AEDYVHRIGRTGRAG+ G AIS VS  E   L  IE
Sbjct: 301 TEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIE 360

Query: 360 RLTQALLPRVNLAGFE-PTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAENKPKA 418
           +L    + R+ + G+E  +  L   +L TR    KK ++   V     ++  +AE   + 
Sbjct: 361 KLIGQKIRRITVPGYEVGSRDLLLKQLQTRRSFAKKQQRLDNV-----SEQIIAEKSMQG 415

Query: 419 GHRGQPTGQARTAKK 433
                  GQA +  K
Sbjct: 416 RRVKMKVGQAPSKAK 430