Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 487 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  378 bits (971), Expect = e-109
 Identities = 216/457 (47%), Positives = 286/457 (62%), Gaps = 10/457 (2%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F +LGLS+PIL AI E GY   + +Q Q IP  L GKD+MA AQTGTGKTA F LP+L
Sbjct: 22  MKFDTLGLSSPILNAIAECGYLQLTQVQQQVIPLALEGKDIMACAQTGTGKTASFALPVL 81

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120
           E L+K P  +   +RAL++TPTRELA Q+  N+  Y + LPLK+  V+GG  +NPQ + +
Sbjct: 82  EQLSKQPNDKP-LLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGV 140

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
            +G DILVATPGRL D+  Q  +    +  LV+DEADRMLD+GF+RDI K+ +L+  + Q
Sbjct: 141 EQGVDILVATPGRLFDIIGQFHLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIATEHQ 200

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
            +LFSAT+S  +++L+  ++N P  ++V+  N+TA TVEQ +Y  D ++K ++L +LV  
Sbjct: 201 TMLFSATYSDAVKQLSHKMLNQPEWVNVAE-NTTASTVEQLVYRVDKRRKAELLSELVGR 259

Query: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
            NW+QVLVF  TK  A  L   L   G++A   HG+K+QGAR R L DFKAG++R+LVAT
Sbjct: 260 NNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRVLVAT 319

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
           D+AARG+DI  LP V+N ELP +AEDYVHRIGRTGRAG  G+AIS VS  +   L  IE 
Sbjct: 320 DVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEMLAEIEA 379

Query: 361 LTQALLPRVNLAGFEPTNQLP----ESKLDTRPLKPKKPKKPKK--VEGAGENKGSVAEN 414
           L    LP     G+E    LP    E+  DT        K  +    +GAG N G+ A  
Sbjct: 380 LIGQTLPVTVQPGYEEGTPLPARYREAPTDTTKTAKWNYKSSRNTGAKGAGGN-GTKANG 438

Query: 415 KPKAGHRGQPTGQARTAKKGGTHSEPKKPTKRPVRNG 451
               G RG+  G    A  G +     +  K P R G
Sbjct: 439 SKGNGARGK-GGFGGNAGFGQSSESQARARKSPAREG 474