Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  417 bits (1073), Expect = e-121
 Identities = 215/446 (48%), Positives = 298/446 (66%), Gaps = 8/446 (1%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F+ LGL + ++KA+ E GY TP+PIQ +AIP++LAGK+V+AAAQTGTGKTA F LP+L
Sbjct: 1   MPFSQLGLHSALVKAVTELGYTTPTPIQTKAIPSILAGKNVLAAAQTGTGKTASFVLPLL 60

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120
              A  PK+R  +VRA+ILTPTRELA Q+++N+  Y ++LPL +  ++GGV   PQ +R+
Sbjct: 61  HRFADAPKIRPKRVRAIILTPTRELALQVEENINQYAKYLPLTAMAMYGGVDAAPQKKRL 120

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
            +G D+LVATPGRL+D+Y Q A++FD++ +LVLDEADRMLDMGFI DI+ I++ LPE+RQ
Sbjct: 121 IEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINSIIEKLPEQRQ 180

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
           NLLFSAT S +++ LAK  + + +EI +S  ++ +  ++Q +   D  KK  +L  L++E
Sbjct: 181 NLLFSATLSKQVKALAKSAIPDAIEIEISRKSAASTHIDQWLTTVDKDKKSALLSHLIQE 240

Query: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
            NW Q L+F++TKHGA +L + L ++G+ A A H  +SQ  R + L DFKAG+V  LVAT
Sbjct: 241 QNWSQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAVREQLLIDFKAGKVSFLVAT 300

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
            +A+RGIDI  L +V+N++LP  A+DY+HRIGRTGRAG  G+AIS VS  +   L AIER
Sbjct: 301 GVASRGIDIDALARVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDDFRNLCAIER 360

Query: 361 LTQALLPRVNLAGFEPTNQLPESKLDTRPLK----PKKPKKPKKV----EGAGENKGSVA 412
               ++ R  +AGFEP   +P S LD  P       +KP  P +           K    
Sbjct: 361 RLGHVIVRREIAGFEPKKVVPISILDFVPKSASKTERKPNSPAETNLQSRPYSSGKPGTF 420

Query: 413 ENKPKAGHRGQPTGQARTAKKGGTHS 438
           E      HR      A  A+K GT S
Sbjct: 421 EATQAKKHRSAKAAPAPKAQKTGTDS 446