Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  294 bits (752), Expect = 4e-84
 Identities = 172/426 (40%), Positives = 251/426 (58%), Gaps = 13/426 (3%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F  LG+++ +   +   G   P+ +Q  AIPA+LAG+DV+A +QTG+GKT  F LP+L+ 
Sbjct: 19  FAELGINSALCSVLPA-GLKHPTRVQQLAIPAILAGRDVLALSQTGSGKTLAFGLPLLQA 77

Query: 63  L---AKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHL---PLKSAVVFGGVKINPQ 116
           +    +     A + +AL+L PTRELA Q+   +      L   PL   ++ GG+    Q
Sbjct: 78  IHQQLESVSSSACKAQALVLVPTRELAQQVTMALQALATQLSPVPLNIQLLCGGIAQEEQ 137

Query: 117 MQRMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLP 176
           +  +     ++VATPGRL+DL  Q+ +  D ++ LVLDEADR+L+MGF  D+ K++ ++P
Sbjct: 138 LVELTAKPQLIVATPGRLLDLCTQSHISLDSIKYLVLDEADRLLEMGFWPDVQKLMAMMP 197

Query: 177 EKRQNLLFSATFSTEIRELA-KGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLV 235
           +++Q LLFSAT    +  LA K L NNP  +  S  N+ A  +E+ +Y  +   K   L+
Sbjct: 198 KRKQTLLFSATLPEALDSLAGKLLTNNPQRVEASTRNAVAADIEERLYLVNKGSKAQALI 257

Query: 236 KLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVR 295
            L+K+  W QVLVF+  +  A+ +A  L + G+ AAA+HG K Q  R++ LADFKA  ++
Sbjct: 258 ALLKQYRWPQVLVFISARDDADAIAKRLLKAGINAAALHGEKDQTVRSQTLADFKAHRIQ 317

Query: 296 ILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPEL 355
           ++VATD+ ARGI +  LP V+N +LP  A  YVHRIGRT RAG  G AISLV   E   L
Sbjct: 318 VVVATDLMARGIHVDALPVVINLDLPTSAPVYVHRIGRTARAGANGLAISLVCHGEMLSL 377

Query: 356 FAIERLTQALLPRVNLAGF----EPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSV 411
            AI  LT   LP  +LA F    +P+ +  E   D + + PK+P + K+      NK SV
Sbjct: 378 TAIRNLTARELPLASLADFPVTDKPSERAREGGTDNK-VAPKRPPRDKQANRRSLNKHSV 436

Query: 412 AENKPK 417
              K K
Sbjct: 437 KAFKGK 442