Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  544 bits (1401), Expect = e-159
 Identities = 287/436 (65%), Positives = 345/436 (79%), Gaps = 7/436 (1%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F+SLGLSAPI KA+ E+GY+TPSPIQ QAIPAVL GKDVMAAAQTGTGKTAGFTLP+L
Sbjct: 1   MSFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL 60

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120
           ELL+KG K +A Q+RAL+LTPTRELAAQ+ ++V  YG++LPL+SAVVFGGV INPQ+Q++
Sbjct: 61  ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL 120

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
             G D+LVATPGRL+DL  Q AVKF+QLE+LVLDEADRMLDMGFIRDI KIL +LP KRQ
Sbjct: 121 RHGVDVLVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQ 180

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
           NL+FSATFS EIRELAKGLVN PVEISV+P N+ A TV+Q I P D  +K  +L++L+K+
Sbjct: 181 NLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQ 240

Query: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
            +WQQVLVF RTKHGANRLA  L +  ++AAAIHGNKSQGART+ALADFK+GEVR+LVAT
Sbjct: 241 EDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVAT 300

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
           DIAARG+DI QLPQVVNF+LP + EDYVHRIGRTGRAG +G+A+SLVS+ E   L  IER
Sbjct: 301 DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSSEETKLLRDIER 360

Query: 361 LTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAENKPKA-- 418
           L   +L R  + GF P + LPES L+       K  K K V    +++ S  +  P+A  
Sbjct: 361 LINRVLERQEVEGFSPVHTLPESTLNAH----GKENKIKAVASQRKHR-SAGKPAPRAGS 415

Query: 419 GHRGQPTGQARTAKKG 434
           G  G+ T   +TA  G
Sbjct: 416 GRDGRKTPAPKTADNG 431