Pairwise Alignments

Query, 383 a.a., DNA cytosine methyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., putative cytosine-specific methyltransferase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 83.2 bits (204), Expect = 1e-20
 Identities = 103/405 (25%), Positives = 153/405 (37%), Gaps = 75/405 (18%)

Query: 16  KPIIFSFFAGSGFLDLGFETSGFDVRFVNEFHKPFLDAYKYSR----EHMGLPK--PKYG 69
           KP     FAG G L LG   +G+   F  E +       +Y+      H   P   PK  
Sbjct: 3   KPTYIDIFAGCGGLSLGLHNAGWQGLFAVEKNADAFKTLEYNLIEKVNHFLWPDWLPKTS 62

Query: 70  HYLGSIDDFVTGEKKQLLYDLVQEAKSEALTGFIGGPPCPDFSVAGKNKGSDGENGILTR 129
           H    I+  +   K+QLL           +   +GGPPC  FS+AG+ K +D  N  L +
Sbjct: 63  H---DINVVLKDYKEQLL------GLQRKVDLVVGGPPCQGFSMAGRRKENDQRNN-LVK 112

Query: 130 VYIDAIVQNQPDFFLFENVKGLW-----KTGKHRAFYDAMKAHLEDAGYVLTDRLTNSIE 184
            YI  I   QP    FENVKG          K + +   ++  L  AGY +   L N  E
Sbjct: 113 SYIKFIKTIQPKIIFFENVKGFTLEFRKNKDKGKEYSSYVERALNRAGYYVKGELVNFGE 172

Query: 185 FGVPQDRDRILMFGIHR------KHVGDKLTSIELARDFDWEREVKFDKTKVLDKSI--- 235
           +G+PQ R R ++ G+ +      K    +  S+       +  +        L  +I   
Sbjct: 173 YGIPQKRTRFILVGVRKDVPNVSKDTASQFFSLIKNNRHSFLSKKNLTIETTLGDAISDL 232

Query: 236 --------WPELATYKENSIRKLPKHLDNYRELTVEHWFQKNDVNQHLNAKHHF---RP- 283
                    P+  ++K      +     +Y++L       +  VNQ +   H F   RP 
Sbjct: 233 LRENGEVDSPDTKSFKAGMYSSIK---SSYQQL------MRIGVNQCIPDSHRFPKHRPE 283

Query: 284 YSDKFKTIQEGDDKKKSFKRLHRYRF---------------SPTAAYGNNEVHLHPYKPR 328
            S KF+ I +   K K      R RF               SPT     ++ ++H  +PR
Sbjct: 284 ISSKFQIILDTCKKNKDIDSYTRERFNIKKHTIIPLDEQKKSPTITTLPDD-YIHYSEPR 342

Query: 329 RLSAAEALAIQSLPKEFHLPPTMTLSDMFKT--------IGNGVP 365
            L+  E   IQS P  +      T     +T        IGN +P
Sbjct: 343 ILTVREYARIQSFPDWYIFQGKYTTGGKRRTQEVPRYTQIGNAIP 387