Pairwise Alignments

Query, 447 a.a., sodium:proton antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 494 a.a., Na+/H+ antiporter NhaC (RefSeq) from Shewanella amazonensis SB2B

 Score = 87.0 bits (214), Expect = 1e-21
 Identities = 108/463 (23%), Positives = 189/463 (40%), Gaps = 57/463 (12%)

Query: 10  QQPNAFALLPLMVFLLLFMGVGSYLTWQGVEFAFYQLPAPVAVLPAVVLAIALSKESLNR 69
           +QP+    L  +V L+  +    Y       +   Q+   +A   A+V+ I         
Sbjct: 5   KQPSLVDALIPVVALISMLAAAVYFFSSDSSYGANQIALIIAACLAMVVGI-----KNGH 59

Query: 70  AIEQFLRGVGHSDIMAMCIIYLL--AGAFAAVAKATGGVDATVNLGLALLPASLILPGLF 127
             +    G+ HS  +A   + +L   G+       +G V A +  G+ +L          
Sbjct: 60  CWKDIEAGMVHSIGVATPALLILFSVGSLIGAWILSGTVPAMIYYGMQVLSPDYFYAASC 119

Query: 128 VISAFVATAMGTSMGTIAAIAPVALGIAQAADLNLGLTAGVVLSGAMFGDNLSIISDTTI 187
           ++ A VA ++G+S      +    +GIAQA  L+L +TAG ++SGA FGD +S +SDTT 
Sbjct: 120 LLCALVALSIGSSWTVAGTLGIALIGIAQAVGLSLEITAGAIISGAYFGDKMSPMSDTTN 179

Query: 188 AATRSQGCHMRDKFKENIRIALPAALLALVVFT---FSSQTAQSPQTSD----------- 233
            A    G  +    +      +P+ LLAL++F     S  TA +    D           
Sbjct: 180 LAPAVAGTDIFSHIRHMTWTTIPSILLALLIFLVIGLSGDTAGADTNLDATLTLLSDEFH 239

Query: 234 IEWLKVLPYLTILVLAVMGLNVFLVLLVGILMAA---------GVGGLSDGYSLS---AL 281
           I    +LP   ++ LA   +  F  +++G L            GV  L++  SLS   AL
Sbjct: 240 IGPHLLLPLAVVIYLAYRKMPAFPTVILGTLAGVFCAAVFQFDGVVKLANDTSLSSALAL 299

Query: 282 TKDVY--------AGFGNMQEIFLLSMLIGGMGELMKQQ---------GGLAFLTHHISR 324
            K ++        A  GN     LLS   GGM  ++            GG+   T  ++R
Sbjct: 300 IKGLWIAMFNGYSASTGNEMLDGLLSR--GGMSGMVNTVWLILAAMAFGGVMEATGLLNR 357

Query: 325 MIDKFARSHSDVQKMRASELGIAGLVALTNVCTANNTVAIIVSGGVAK-ELAEHNGVTAK 383
           ++    R       +  + LG A      N+ T +  +AII+ G + K E   H      
Sbjct: 358 LLQSMLRMVKGSSSLVITTLGCA---IGANIITGDQFIAIILPGRMLKLEYTRHKLAPVN 414

Query: 384 RSASLLDIFSCIMQGVLPYGAQALLLGSIFQMSPLSVVSYSYY 426
            S +L D  + +   ++P+      + S   ++ ++ + ++++
Sbjct: 415 LSRALED-SATVTSPLVPWNTCGAFMASTLGVATIAYLPFAFF 456