Pairwise Alignments

Query, 447 a.a., sodium:proton antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., Na+/H+ antiporter NhaC (RefSeq) from Shewanella loihica PV-4

 Score =  535 bits (1379), Expect = e-157
 Identities = 269/440 (61%), Positives = 352/440 (80%), Gaps = 3/440 (0%)

Query: 4   TSSSKPQQPNA--FALLPLMVFLLLFMGVGSYLTWQGVEFAFYQLPAPVAVLPAVVLAIA 61
           T+ ++   P A   ALLPL +FL LF+G G Y   QGV+FAFYQLP+ VA+LPA++LA+ 
Sbjct: 2   TTPTQTTAPKASFIALLPLFLFLALFIGAGVYFQSQGVDFAFYQLPSVVAILPAIILALL 61

Query: 62  LSKESLNRAIEQFLRGVGHSDIMAMCIIYLLAGAFAAVAKATGGVDATVNLGLALLPASL 121
           +SKE LN++IE F+ G+GHS+I+AMC+IYLLAGAFA+VAKATGGVDATV LGL+L+P++L
Sbjct: 62  ISKEKLNQSIETFIGGIGHSNIIAMCLIYLLAGAFASVAKATGGVDATVALGLSLVPSNL 121

Query: 122 ILPGLFVISAFVATAMGTSMGTIAAIAPVALGIAQAADLNLGLTAGVVLSGAMFGDNLSI 181
           +LPG FVI+AF+ATAMGTSMGTIAA+AP+ALG+A+ A ++L L AG V+SGA+FGDNLSI
Sbjct: 122 LLPGFFVIAAFIATAMGTSMGTIAAVAPIALGVAEEAQIDLALMAGAVISGALFGDNLSI 181

Query: 182 ISDTTIAATRSQGCHMRDKFKENIRIALPAALLALVVFTFSSQTAQSPQTSDIEWLKVLP 241
           ISDTTIAATR+QGC M+DKF+EN+  A+PA+L+ LVVFT + Q         I++LKV+P
Sbjct: 182 ISDTTIAATRTQGCEMKDKFRENLIFAIPASLITLVVFTLAGQGQADVAPQQIDFLKVIP 241

Query: 242 YLTILVLAVMGLNVFLVLLVGILMAAGVGGLSDGYSLSALTKDVYAGFGNMQEIFLLSML 301
           YLTILVLAV GLNVF+VL VGIL+A   G  +  Y L    KD+YAGF NMQEIF+LSML
Sbjct: 242 YLTILVLAVAGLNVFVVLTVGILLAGITGFATLDYGLIQFGKDIYAGFSNMQEIFILSML 301

Query: 302 IGGMGELMKQQGGLAFLTHHISRMIDKFARSHSDVQKMRASELGIAGLVALTNVCTANNT 361
           +GG+  LM+QQGGLAF++  I ++I +F+ +  +    RASELG+AG+VALTN C ANNT
Sbjct: 302 VGGLAALMQQQGGLAFVSKQIEKLIVRFSSAKGEA-STRASELGMAGIVALTNTCVANNT 360

Query: 362 VAIIVSGGVAKELAEHNGVTAKRSASLLDIFSCIMQGVLPYGAQALLLGSIFQMSPLSVV 421
           V+I+V+G +AK+LAE + VT KR+AS+LDIFSCI+QG++PYGAQALL+ S F +SPL  V
Sbjct: 361 VSIVVTGDIAKDLAEKHEVTPKRAASILDIFSCIIQGLIPYGAQALLIASTFSISPLQAV 420

Query: 422 SYSYYCFFLAVAALVAVFRR 441
           ++++YC  LA+ A+  V  R
Sbjct: 421 AHAWYCMILAIVAIAIVVLR 440