Pairwise Alignments

Query, 447 a.a., sodium:proton antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., Na+/H+ antiporter NhaC (RefSeq) from Shewanella loihica PV-4

 Score = 69.7 bits (169), Expect = 2e-16
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 17/179 (9%)

Query: 51  AVLPAVVLAIALSKESLNRAIEQFLRGVGHSDIMAMCIIYLLAGAFAAVAKATGGVD--- 107
           AV+      + +  + L++A+    +GV       +  IY+L  A+  +A   G ++   
Sbjct: 317 AVVGLAATLVLVVSQGLDKAL--IFKGVIAGARSMLPAIYILLFAWT-IAGVIGQMETGK 373

Query: 108 -----ATVNLGLALLPASLILPGLFVISAFVATAMGTSMGTIAAIAPVALGIAQAADLNL 162
                AT N+  ALLPA L     FV++   A + GTS GT   + P+A  +A     N+
Sbjct: 374 YMASLATGNIPFALLPAVL-----FVLAGLTAFSTGTSWGTFGIMLPIAADMAMGTHTNM 428

Query: 163 GLTA-GVVLSGAMFGDNLSIISDTTIAATRSQGCHMRDKFKENIRIALPAALLALVVFT 220
            L     VL+GA+FGD+ S ISDTTI ++    CH  D     +  AL  A ++LV +T
Sbjct: 429 MLPMLASVLAGAVFGDHCSPISDTTILSSTGANCHHIDHVLTQLPYALIVAGISLVGYT 487



 Score = 33.5 bits (75), Expect = 2e-05
 Identities = 53/225 (23%), Positives = 92/225 (40%), Gaps = 35/225 (15%)

Query: 237 LKVLPYLTILVLAVMGLNVFLVLLVGILMA----AGVGGLSDGYSLSALTKDVYAGFG-- 290
           L +LP +  ++LA+    V L L VGIL+     A    L  G  L      ++   G  
Sbjct: 11  LSLLPPVVAILLAIFTRRVLLSLGVGILLGALLIADFSPLDMGQYLGQQVVGLFWDDGAL 70

Query: 291 NMQEIFLLSMLI--GGMGELMKQQGGLAFLTHHISRMIDKFARSHSDVQKMRASELGIAG 348
           N   ++LL  LI  G +  L+   G         ++    +AR H  ++  R ++L    
Sbjct: 71  NSWNVYLLGFLILLGMITALITVSGA--------AKAFADWARQH--IRNKRDAKLLTMF 120

Query: 349 LVALTNVCTANNTVAIIVSGGVAKELAEHNGVTAKRSASLLDIFS---CIMQGVLPYGAQ 405
           L  +  +    N+   +V G VA+ L +   ++  + A LLD  +   C++  V  +GA 
Sbjct: 121 LGCVVFIDDYFNS---LVVGSVARPLTDRYYISRSKLAYLLDSTAAPICVISPVSSWGAY 177

Query: 406 AL-LLGSIFQMSP----------LSVVSYSYYCFFLAVAALVAVF 439
            + L+G I               + ++  ++Y  F  V  L   F
Sbjct: 178 IIALIGGILTAHGFTDSGHLSVFIQMIPMNFYAIFALVLLLCVAF 222