Pairwise Alignments

Query, 447 a.a., sodium:proton antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 506 a.a., Na+/H+ antiporter NhaC (RefSeq) from Shewanella loihica PV-4

 Score = 82.4 bits (202), Expect = 3e-20
 Identities = 102/482 (21%), Positives = 196/482 (40%), Gaps = 68/482 (14%)

Query: 5   SSSKPQQPNAFALLPLMVFLLLFMGVGSYLTWQGVEFAFYQLPAPVAVLPAVVLAIALSK 64
           S+ + +QP     L  ++ L+  +    YL      +   Q    +A++ A  + + +  
Sbjct: 19  SAKRHKQPTLLDALIPIIALVCMLTASVYLFSSDSSYGANQ----IALIMAACITLVIGV 74

Query: 65  ESLNRAIEQFLRGVGHSDIMAMCIIYLL--AGAFAAVAKATGGVDATVNLGLALLPASLI 122
           ++   + ++   G+  S  +A   + +L   G+        G V   +  G+ +L     
Sbjct: 75  KN-GYSWKEMEAGIVKSVSLATGALLILFSVGSLIGTWILAGTVPTMIFYGMKILNPDYF 133

Query: 123 LPGLFVISAFVATAMGTSMGTIAAIAPVALGIAQAADLNLGLTAGVVLSGAMFGDNLSII 182
                ++ A VA ++G+S      +    +G+A A  L++ +TAG ++SGA FGD +S +
Sbjct: 134 YAASCLLCAVVALSIGSSWTVAGTLGIALIGVAGAMGLSVEITAGAIISGAYFGDKMSPM 193

Query: 183 SDTTIAATRSQGCHMRDKFKENIRIALPAALLALVVFTFSSQTAQSPQTSD--------I 234
           SDTT  A    G  +    +  +    P+ LLAL+ F F    + S   +         I
Sbjct: 194 SDTTNLAPAVAGSELFGHIRHMVWTTTPSILLALIGFLFIGLNSDSSSVATDLAATMARI 253

Query: 235 EWL------KVLPYLTILVLAVMGLNVFLVLLVGIL------------------------ 264
           E         +LP L +LVLA   L  F  +++G L                        
Sbjct: 254 ETQYHPGLHLLLPLLVVLVLAYKKLPAFPTVILGTLAGAICAALFQFDGVIKFVNDDSLP 313

Query: 265 -MAAGVGG----LSDGYSLSALTKDV-----YAGFGNMQEIFLLSMLIGGMGELMKQQGG 314
            M A V G    + DGY+ +   K +       G  +M     L +     G +M++ G 
Sbjct: 314 TMVALVKGIWVAMFDGYTANTGDKTLDSLLSRGGMSSMVNTVWLILCAMAFGGVMEKTGL 373

Query: 315 LAFLTHHISRMIDKFARSHSDVQKMRASELGIAGLVALTNVCTANNTVAIIVSGGVAKEL 374
           L  L   + R++     S S +    AS +G        N+ T +  +AI++ G + K  
Sbjct: 374 LQRLLQGVLRLVKS---SGSLIITTLASCIG-------ANLITGDQFIAILLPGRMLKVE 423

Query: 375 AEHNGVTAKRSASLLDIFSCIMQGVLPYGAQALLLGSIFQMSPLSVVSYSYY---CFFLA 431
            E +G+     +  L+  + I   ++P+      + S   ++ ++ + ++++   C F++
Sbjct: 424 YEKHGLAPVNLSRALEDSATITSPLVPWNTCGAYMASTLGVATIAYLPFAFFNLICPFVS 483

Query: 432 VA 433
            A
Sbjct: 484 AA 485