Pairwise Alignments

Query, 447 a.a., sodium:proton antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 525 a.a., Na+/H+ antiporter NhaC family protein from Methanococcus maripaludis S2

 Score = 58.9 bits (141), Expect = 4e-13
 Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 27/224 (12%)

Query: 14  AFALLPLMVFLL-----------LFMGVGSYLTWQGVEFAFYQLPAPVAVLPAVVLAIAL 62
           ++ +LPL+V +L           LF GVG   ++  ++ ++      +  L   V+   +
Sbjct: 272 SYLVLPLVVLILAIIFAFMISGGLFAGVGIIESFLSMDASWGLFWGGLVTLLFTVIYFIV 331

Query: 63  SKESLNRAIEQFLRGVGHSDIMAMCIIYLLAGAFAAVAKATGGVDATVNLGLALLPASLI 122
           SK    + I   L   G   ++    I +LA +  +V    G      +L    LP  ++
Sbjct: 332 SKAVPAKDIAN-LFAKGSKLMLPAITILILAWSLGSVIGDLGTGTYLSSLIQNSLPVQIL 390

Query: 123 LPGLFVISAFVATAMGTSMGTIAAIAPVALGIAQAADLNLGLT------AGVVLSGAMFG 176
              LF++S F+A + GTS GT   + P+A+ +A    + LG+          VL GA++G
Sbjct: 391 PAILFLLSGFMAFSTGTSWGTFGIMLPIAVPMA----VGLGMPEFVVPFVAAVLGGAIYG 446

Query: 177 DNLSIISDTTIAATRSQGCHMRDKFKENIRIALP-AALLALVVF 219
           D+ S ISDTTI ++   G     K  ++++  LP   L+ ++ F
Sbjct: 447 DHSSPISDTTIMSSTGAG----TKHIDHVQTQLPYTTLIGIMAF 486



 Score = 24.6 bits (52), Expect = 0.008
 Identities = 50/239 (20%), Positives = 94/239 (39%), Gaps = 52/239 (21%)

Query: 233 DIEWLKVLPYLTILVLAVMGLNVFLVLLVGILMAA--------------GVGGLSDGYSL 278
           D   L +LP +  + LA++   V++ L +GIL  +               V  +     L
Sbjct: 2   DFGILSLLPPVVAIGLALITKRVYMSLFLGILAGSLLYNNWNIVASASHIVNTIIGSVEL 61

Query: 279 SALTK-DVYAGFGNMQEIFLLSMLI--GGMGELMKQQGGLAFLTHHISRMIDKFARSHSD 335
           +++T    + G GN+  + +L  L+  G +  L+ + GG     +  S  I        +
Sbjct: 62  TSITGISSFTGVGNLWNLLILLFLVMLGILIALITRAGGALAYGNWASTKI-----KSKE 116

Query: 336 VQKMRASELGIAGLVALTNVCTANNTVAIIVSGGVAKELAEHNGVTAKRSASLLDIFS-- 393
              +  S LGI   +        ++    +  G V K + +   ++  + A ++D  +  
Sbjct: 117 GASLSTSLLGILLFI--------DDYFNCLTVGTVMKPITDKFKISRAKLAYIIDSTAAP 168

Query: 394 -CIMQGVLPY--------GAQALLLGSIFQMSP----LSVVSYSYYCFFLAVAALVAVF 439
            CI+  V  +        G   +  G++  MSP     S + Y+ Y       ALVA+F
Sbjct: 169 VCILMPVSSWFAAVVGNLGESGVGTGALSSMSPSGVFFSAILYNTY-------ALVALF 220