Pairwise Alignments

Query, 447 a.a., sodium:proton antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., hypothetical Na+/H+ antiporter (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 65.1 bits (157), Expect = 5e-15
 Identities = 56/189 (29%), Positives = 86/189 (45%), Gaps = 6/189 (3%)

Query: 25  LLFMGVGSYLTWQGVEFAFYQLPAPVAVLPAVVLAIALSKESLNRAIEQFLRGVGHSDIM 84
           L F  +GS+          Y     + V  A+ L + L  ++  +A  Q     G   ++
Sbjct: 296 LPFSVLGSFENTNVGSSLVYGALCSLGVSIALALRLKLGAKNWIKAAPQ-----GVMAML 350

Query: 85  AMCIIYLLAGAFAAVAKATGGVDATVNLGLALLPASLILPGLFVISAFVATAMGTSMGTI 144
               I L A A  AV +         +L    LP  ++   +FV+S  +A A GTS GT 
Sbjct: 351 PAINILLFAWAIGAVVRDVETGKYLASLANGNLPIEVLPAVVFVLSCAMAFATGTSWGTF 410

Query: 145 AAIAPVALGIAQAADLNLGL-TAGVVLSGAMFGDNLSIISDTTIAATRSQGCHMRDKFKE 203
             + P+A  +A A+D++L L     VL+G++FGD+ S IS T+I +    GCH  D    
Sbjct: 411 GIMLPLAGDMAAASDISLMLPMLAAVLAGSVFGDHSSPISSTSILSATGAGCHHIDHVMT 470

Query: 204 NIRIALPAA 212
            +  AL  A
Sbjct: 471 QLPYALAMA 479



 Score = 28.9 bits (63), Expect = 4e-04
 Identities = 51/229 (22%), Positives = 91/229 (39%), Gaps = 36/229 (15%)

Query: 232 SDIEWLKVLPYLTILVLAVMGLNVFLVLLVGILMAA-GVGGLSDGYSLSALTKDVYAGF- 289
           +D  W  VLP L  + LA++   V L L VGI+  +  +   S   SL  +   V   F 
Sbjct: 7   ADSGW-SVLPPLLAVALAIITRRVLLSLGVGIVAGSLLLNQFSPFDSLHYMFNTVLRIFW 65

Query: 290 --GNMQ----EIFLLSMLIGGMGELMKQQGGLAFLTHHISRMIDKFARSHSDVQKMRASE 343
             G +      + L  +L+GG+  LM   G               FA   +   K R   
Sbjct: 66  VDGALNRDNINMLLFMLLLGGLISLMSVSGATR-----------AFAEWAAKRAKTRRGA 114

Query: 344 LGIAGLVALTNVCTANNTVAIIVSGGVAKELAEHNGVTAKRSASLLDIFS---CIMQGVL 400
            G+ G++        ++    +  G + + + +   ++  + A LLD  +   C++  + 
Sbjct: 115 KGLTGIMVF--AFFIDDFFHSLSVGAICRPVTDRFQISRAKLAYLLDSTAAPVCVLMPIS 172

Query: 401 PYGAQAL-LLGSIF------QMSPLS----VVSYSYYCFFLAVAALVAV 438
            +GA  + L+G I         SP+S    ++  + Y  F  +  LV +
Sbjct: 173 SWGAYIIALVGGIMAAHGITDQSPISAFVEMIPMNLYAVFTLLMVLVVI 221